SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45430 | AT | Annotation by Michelle Graham. TAIR10: AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317 | SoyBase | E_val: 4.00E-87 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009647 | GO-bp | Annotation by Michelle Graham. GO Biological Process: skotomorphogenesis | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010359 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003680 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: AT DNA binding | SoyBase | N/A | ISS |
| PF03479 | PFAM | Domain of unknown function (DUF296) | JGI | ISS | |
| UniRef100_B9RDE5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ESC, putative n=1 Tax=Ricinus communis RepID=B9RDE5_RICCO | SoyBase | E_val: 3.00E-102 | ISS |
| UniRef100_I1J7Y6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7Y6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g34580 not represented in the dataset |
Glyma01g34580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g02580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g144400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g34580.1 sequence type=CDS gene model=Glyma01g34580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAATCATCCCTCACCACCAATTCCAGCCCCACCACAACCACCAAAACACCGAGGATGAAGCCGGCAATGGCCGCGGCCAGAAGCGAGATCGCGACGAGAACGCCGGCGGCGGAGGCGGGGCCACCACGCCCCCCCAGGGCGGCGGGGAAGGCAAGGAATCCGGGTCAGGAGATGGAGGAGGGAGTGACATGGGGAGAAGACCAAGAGGAAGACCCGCAGGGTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGAGACAGTGCCAACGCTCTCCGATCCCATGTCATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCATCACCGCCTTTGCAAGGCGGCGACAGCGCGGTGTCTGCGTGCTCAGCGGCAGCGGCACTGTCACCAACGTCACGCTCCGGCAGCCGGCCTCGCCGGGAGCAGTTGTGACCCTTCATGGAAGATTTGAGATTTTGTCCCTGTCCGGTTCTTTTCTGCCGCCGCCGGCCCCACCTGCGGCGTCAGGACTAGCCATATATCTGGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGTGTGGTGGGACCCCTTGTGGCCTCAGGTCCCGTTGTCATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTGCCCTTAGAGGAAGAGGAAACTCCGGTGGCAGTTGCTGGCAACGGAGGATTAGGATCCCCAGGAATCCCAGGAACCCAGCAACAACCGCAACAGCAACAGCAACAACAACTTGTGGGAGATCCTAATAGTTCTTCTCTTTTCCATGGAATGCCTCAGAATCTTCTCAATTCAGTTCAATTACCGGCTGAGGGTTATTGGGGTGGAAGTGCTCGCCCTCCCTTTTAA
>Glyma01g34580.1 sequence type=predicted peptide gene model=Glyma01g34580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPIIPHHQFQPHHNHQNTEDEAGNGRGQKRDRDENAGGGGGATTPPQGGGEGKESGSGDGGGSDMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESITAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVAVAGNGGLGSPGIPGTQQQPQQQQQQQLVGDPNSSSLFHGMPQNLLNSVQLPAEGYWGGSARPPF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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