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Report for Sequence Feature Glyma01g34523

Feature Type:gene_model
Chromosome:Gm01
Start:46876952
stop:46881811
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g34523
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00210AT Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 31 | chr4:85693-86888 REVERSE LENGTH=220 SoyBaseE_val: 7.00E-63ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF03195PFAM Protein of unknown function DUF260 JGI ISS
UniRef100_B9RDE0UniRef Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RDE0_RICCO SoyBaseE_val: 4.00E-69ISS
UniRef100_UPI00023370ABUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023370AB related cluster n=1 Tax=unknown RepID=UPI00023370AB SoyBaseE_val: 1.00E-134ISS

Expression Patterns of Glyma01g34523
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g34523 not represented in the dataset
Glyma01g34523 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g34523
ParalogEvidenceComments
Glyma03g02631 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g34523 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g143800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g34523
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g34523
>Glyma01g34523.1   sequence type=CDS   gene model=Glyma01g34523   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTGTGGGGGTAACAAGATTGGTGGAAGTGATAGGGGTGGGCCTTGTGGTGCCTGCAAGTTTCTGAGAAGAAAGTGTGTGAAGGGTTGCATATTTGCACCATACTTTGACTCAGACCAAGGAACGGCTCATTTTGCTGCGGTGCACAAGGTGTTTGGTGCTAGCAATGCCTCTAAGTTACTCATGCGGATTCCAGCACACAAAAGACTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGACCCCGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTCATGAACTTGCAGGCTGAGTTAACCTATGTCCAGGCTCGTCTCGCGACGATGCAGCGACTGCCAATGCAAGTGGCTCCTCTTCCACACCCTCAAAGCTCTTCACCACCACCAACCTTTCATTCCTCAGATCACTTGGCATCAAATGCTGACTTGCAAAGTGCCCCTATGATGCACTTTGATCCTCTTCAGCCACATTCAGCATCATTAGAGTTAAGCAGCGTCGTTTTCAATCAATCAGATCAACAACTCGAGGTAGGGAACTCCAAGTTTTGGCACGGGAATTTGTGA
Predicted protein sequences of Glyma01g34523
>Glyma01g34523.1   sequence type=predicted peptide   gene model=Glyma01g34523   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCGGNKIGGSDRGGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQARLATMQRLPMQVAPLPHPQSSSPPPTFHSSDHLASNADLQSAPMMHFDPLQPHSASLELSSVVFNQSDQQLEVGNSKFWHGNL*






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