Glyma01g34506 - SoyBase

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Report for Sequence Feature Glyma01g34506

Feature Type:	gene_model
Chromosome:	Gm01
Start:	46869790
stop:	46877506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g34506

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G60850	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr3:22482053-22483999 FORWARD LENGTH=648	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q10P50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10P50_ORYSJ	SoyBase	E_val: 0	ISS
UniRef100_UPI00023370AA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023370AA related cluster n=1 Tax=unknown RepID=UPI00023370AA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g34506

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g34506 not represented in the dataset	Glyma01g34506 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g34506

Paralog	Evidence	Comments
Glyma03g02661	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g34506 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g143700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g34506

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g34506

Limit To All Plant Sequences

>Glyma01g34506.2   sequence type=transcript   gene model=Glyma01g34506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAAACCCAAATCCAAACCAAAAAACACAACACTACACAAAACCTCGGCAACAGCAGAGAGAGAGAGAGAGAGAGAGTGACTTCCCCCTTTCCCCATCCATCTTCTTCATCTTGTTGGTTCTCCCATGAATAATTCCAAGAAACAAGAAGAGGAAGACGAGGTTTTCCTCCCGCACCCCCCCGATCTGTCCCCTCCCCACCCCCCCGATGCGTCCTTCTCTCTCCTCTTCCCCTCCTCCCCTTCCTCCTCACACTCCTCCCCTTCTCCTTCTTCACCCCCCAAACCCCTCTTCATCTCCCCCGACCCCCACATCTCGTCCCAGTTCTACACCTTCACCCCCTCCTCCCACGCCCTCATGCTCCGCTCCCTCCTCCTCCGCCGCCTCCCCTCCCCCTCCGACATCCGCTCCGCCACCCCCCGCTCCGTGCTCTCCTCCTGGCGCACCGTCTGGAAGGACCGCAACGAGGACACCGCCTACCTCACCGCCTGGAAACGCATCCAGGACAAGCTTACCACCCACCACGACCCTGATTCCAACACCCACTTCCTCTGCTTCAAAAACAACCCCCACCAATTCGTCCCTCACGTCAACCAGTGGCAGCACATCGTCATGTCCCACCACTCCGACTCCGACCTCTGCCACCTCAACCTCAAGGACACCCTCGACCGCATCAAGCACCACTGGACTGTGGGCGCCAAATTCTACGGCATCCCGGAGAGCTTCATCCGCGTCTGCGTCGCCGCCTGCCCCGTCTGCTCCTCTGCCACCACTGAGGGCGGTTCCTCGGATCCCTCCGTGGCAGCGCGTGGCAAGCGGCGGCGGTTCGAGTACACCGAGAGCTTCGACGTGCCGGCCAGGGAGGTCCCCAGCCGGCTCCAGCAGCTTGCTGCAAAGCACAAGGTTGTGCTTTGCATAAGGCAGAAGTATATTAGGTATAAGCCTTTTATGGCTGAGGTTAAGGACTATGCTTGCCATAGGGCTGGGGAGCCTGCTGCTAAGAAATCTAAGGTTTTGAAGAGGGAGCCCTATGCTTCCAAGAGGTGTGGATGTGGGTTTAGGATTAGGGCAATTGTGCCGATTGCAAATTATAATGAGAAGGATAAGAGTTTTGTGTATCAGGAGGAAGGGGTGGCGGTTTTCAAGCTGTATGCTGTGCACTCCGGGCACGAGCCGGGGCCGTTGGACGGGAATGCAAGGATTATGCATAGGGTTGTTGGGCATAAGGGGGGTGGGTTTTTGATGGATCAGGAGAATAATGTTTATGGGGTGAGTGAGGAGATGGAGGGGGAGGGAGGGTTTGGGGGGTTGTTGGGGAAGGAGGATGGTGGTGGGGATTTGCAGTTTTCGGTGATGCAGCAGGTGCAGGAGTTGAGGAATGAGGTGGGGATGTTAGAAGGGAAGGTTGGGAAGATGCCAAGGGAGATGTTGGGGGCTATTTCGAGGGAGTTGTTCGAGGTTTTGAATAAGGTTAGGAGTATTGGGGAGGTGGGGTTGAAGCCGGGGATTGAGTTGATTGCAGATAAGGCTGTGGCACACGGGGTGGTGGAGGATGATGTGTTGGTTGGGGACAATGATTTGGCTAACTGGAGCAATCATCACGAGAGGATTTATGGGGATGGCAAGGACACCGAGCTGATTGAGGATGACGAGGATAGTTTTGGCCGGACGCTGGGAGAGGTTGTTTCGTGGGGTGATCAGATGACGACAGAGTGCAGGAGTCAGAAGGATGATCTGATGAGTGACACTTGTAAGCCGGAGAAGTGGTTGAAATGCAGCGACTTTGATGAGAAAAGCATTCTTGATTGTGAGGACAGTAAACTAACCAAGCCCGTTAGATTGATCAGACACGACGAGGGTATAGTGTCGGATGTAGTAGGTCTTGGCTGTATGCAGGTTGACAGTTTCTACCCGGACAACCCTAAATGGTATGATTCTCCTTGTGCTTTGGATACTGGTGCTGATTGTGGAGATAGTGCATTCCGTCATGGAGAGATTTTATAGTGCCATCCATGAACATTCAAGTTAATCTACTCTAACTTAGAGATCAAAATCCATCAAGGCTATTTACCAACCCCTTCCAACCAATAGAAGAGGGATTGTACATTTCTGTATACAGAAGATTGGAGCCGCTCACATGATGCCTTTTAGGTGTATTTATTATTCTTGCTTGTGGTTCTGTAAAGTATAACCAGTATGCTTCTTGCACATAACTTTGTTATGAGTATGACTATATCTGATAACCTTGTTCACGGCCTTTGGCTTTCTTGGTCCGTATAATGCACATGAGCACATCAGTGTTTTCAGTAATCTGCTTTTGAACTTCTAGAGATTTTTGTGTGTATTGTGAGGAACTACTACTGGTGATTTATTTCCTTATTGAACTATTGTGTGTTTGAAATTTTCTCTATTGACTTATATGTGCTGTACTCCCTAGCCATTTGCTTTTACATATTTACTCATTTCTTATATGTAAAAGATCATTTGGCTTCTCACTTCTGGTTCAATTTGAAGATTAACTACTTTTACATAGTGGTGAGACAACCCAATATATCATCAGCAGCACAGCTCCATTGTTTATTTCATCTTGGCACATGTCTTGGCAACCTCTTTTGTACTGAATTGAAGAATGAAGGTTTTTGATGCCATAAAGCATGCCTCAAGTTCCCATTGGTTCTGAGGGAGACTGATCTGGAGGGAGATGCTGGACGCTGCAATGACCAAGAAGATCTATGGCCTTAAATTAGGGAGAGTTGTATTGCTGGAACCTTACTCCGGGCAAGTATTTGCTCACAAATTCCCGTGCCAAAACTTGGAGTTCCCTACCTCGAGTTGTTGATCTGATTGATTGAAAACGACGCTGCTTAACTCTAATGATGCTGAATGTGGCTGAAGAGGATCAAAGTGCATCATAGGGGCACTTTGCAAGTCAGCATTTGATGCCAAGTGATCTGAGGAATGAAAGGTTGGTGGTGGTGAAGAGCTTTGAGGGTGTGGAAGAGGAGCCACTTGCATTGGCAGTCGCTGCATCGTCGCGAGACGAGCCTGGACATAGGTTAACTCAGCCTGCAAGTTCATGACCTGCACCATTCAAATTAAGATATAGTAAACCATTTTGTGTTTTCTACCAGATTATGGCATATAAAACAGCCTAGATGCAATGTTTTAGATTTGAGAGTTTGTCACCTCTCTGGTTTGTTTGCGCAATGAGATGCTAGAAATCACACTCTACTATTGGTTTTAGTTTGCTTGAAATCACAAAAATTGTGTGGATTCCATTTCTTATTTAACGGTTTTTACTT

Coding sequences of Glyma01g34506

Limit To All Plant Sequences

>Glyma01g34506.1   sequence type=CDS   gene model=Glyma01g34506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATTCCAAGAAACAAGAAGAGGAAGACGAGGTTTTCCTCCCGCACCCCCCCGATCTGTCCCCTCCCCACCCCCCCGATGCGTCCTTCTCTCTCCTCTTCCCCTCCTCCCCTTCCTCCTCACACTCCTCCCCTTCTCCTTCTTCACCCCCCAAACCCCTCTTCATCTCCCCCGACCCCCACATCTCGTCCCAGTTCTACACCTTCACCCCCTCCTCCCACGCCCTCATGCTCCGCTCCCTCCTCCTCCGCCGCCTCCCCTCCCCCTCCGACATCCGCTCCGCCACCCCCCGCTCCGTGCTCTCCTCCTGGCGCACCGTCTGGAAGGACCGCAACGAGGACACCGCCTACCTCACCGCCTGGAAACGCATCCAGGACAAGCTTACCACCCACCACGACCCTGATTCCAACACCCACTTCCTCTGCTTCAAAAACAACCCCCACCAATTCGTCCCTCACGTCAACCAGTGGCAGCACATCGTCATGTCCCACCACTCCGACTCCGACCTCTGCCACCTCAACCTCAAGGACACCCTCGACCGCATCAAGCACCACTGGACTGTGGGCGCCAAATTCTACGGCATCCCGGAGAGCTTCATCCGCGTCTGCGTCGCCGCCTGCCCCGTCTGCTCCTCTGCCACCACTGAGGGCGGTTCCTCGGATCCCTCCGTGGCAGCGCGTGGCAAGCGGCGGCGGTTCGAGTACACCGAGAGCTTCGACGTGCCGGCCAGGGAGGTCCCCAGCCGGCTCCAGCAGCTTGCTGCAAAGCACAAGGTTGTGCTTTGCATAAGGCAGAAGTATATTAGGTATAAGCCTTTTATGGCTGAGGTTAAGGACTATGCTTGCCATAGGGCTGGGGAGCCTGCTGCTAAGAAATCTAAGGTTTTGAAGAGGGAGCCCTATGCTTCCAAGAGGTGTGGATGTGGGTTTAGGATTAGGGCAATTGTGCCGATTGCAAATTATAATGAGAAGGATAAGAGTTTTGTGTATCAGGAGGAAGGGGTGGCGGTTTTCAAGCTGTATGCTGTGCACTCCGGGCACGAGCCGGGGCCGTTGGACGGGAATGCAAGGATTATGCATAGGGTTGTTGGGCATAAGGGGGGTGGGTTTTTGATGGATCAGGAGAATAATGTTTATGGGGTGAGTGAGGAGATGGAGGGGGAGGGAGGGTTTGGGGGGTTGTTGGGGAAGGAGGATGGTGGTGGGGATTTGCAGTTTTCGGTGATGCAGCAGGTGCAGGAGTTGAGGAATGAGGTGGGGATGTTAGAAGGGAAGGTTGGGAAGATGCCAAGGGAGATGTTGGGGGCTATTTCGAGGGAGTTGTTCGAGGTTTTGAATAAGGTTAGGAGTATTGGGGAGGTGGGGTTGAAGCCGGGGATTGAGTTGATTGCAGATAAGGCTGTGGCACACGGGGTGGTGGAGGATGATGTGTTGGTTGGGGACAATGATTTGGCTAACTGGAGCAATCATCACGAGAGGATTTATGGGGATGGCAAGGACACCGAGCTGATTGAGGATGACGAGGATAGTTTTGGCCGGACGCTGGGAGAGGTTGTTTCGTGGGGTGATCAGATGACGACAGAGTGCAGGAGTCAGAAGGATGATCTGATGAGTGACACTTGTAAGCCGGAGAAGTGGTTGAAATGCAGCGACTTTGATGAGAAAAGCATTCTTGATTGTGAGGACAGTAAACTAACCAAGCCCGTTAGATTGATCAGACACGACGAGGGTATAGTGTCGGATGTAGTAGGTCTTGGCTGTATGCAGGTTGACAGTTTCTACCCGGACAACCCTAAATGGTATGATTCTCCTTGTGCTTTGGATACTGGTGCTGATTGTGGAGATAGTGCATTCCGTCATGGAGAGATTTTATAG

>Glyma01g34506.2   sequence type=CDS   gene model=Glyma01g34506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATTCCAAGAAACAAGAAGAGGAAGACGAGGTTTTCCTCCCGCACCCCCCCGATCTGTCCCCTCCCCACCCCCCCGATGCGTCCTTCTCTCTCCTCTTCCCCTCCTCCCCTTCCTCCTCACACTCCTCCCCTTCTCCTTCTTCACCCCCCAAACCCCTCTTCATCTCCCCCGACCCCCACATCTCGTCCCAGTTCTACACCTTCACCCCCTCCTCCCACGCCCTCATGCTCCGCTCCCTCCTCCTCCGCCGCCTCCCCTCCCCCTCCGACATCCGCTCCGCCACCCCCCGCTCCGTGCTCTCCTCCTGGCGCACCGTCTGGAAGGACCGCAACGAGGACACCGCCTACCTCACCGCCTGGAAACGCATCCAGGACAAGCTTACCACCCACCACGACCCTGATTCCAACACCCACTTCCTCTGCTTCAAAAACAACCCCCACCAATTCGTCCCTCACGTCAACCAGTGGCAGCACATCGTCATGTCCCACCACTCCGACTCCGACCTCTGCCACCTCAACCTCAAGGACACCCTCGACCGCATCAAGCACCACTGGACTGTGGGCGCCAAATTCTACGGCATCCCGGAGAGCTTCATCCGCGTCTGCGTCGCCGCCTGCCCCGTCTGCTCCTCTGCCACCACTGAGGGCGGTTCCTCGGATCCCTCCGTGGCAGCGCGTGGCAAGCGGCGGCGGTTCGAGTACACCGAGAGCTTCGACGTGCCGGCCAGGGAGGTCCCCAGCCGGCTCCAGCAGCTTGCTGCAAAGCACAAGGTTGTGCTTTGCATAAGGCAGAAGTATATTAGGTATAAGCCTTTTATGGCTGAGGTTAAGGACTATGCTTGCCATAGGGCTGGGGAGCCTGCTGCTAAGAAATCTAAGGTTTTGAAGAGGGAGCCCTATGCTTCCAAGAGGTGTGGATGTGGGTTTAGGATTAGGGCAATTGTGCCGATTGCAAATTATAATGAGAAGGATAAGAGTTTTGTGTATCAGGAGGAAGGGGTGGCGGTTTTCAAGCTGTATGCTGTGCACTCCGGGCACGAGCCGGGGCCGTTGGACGGGAATGCAAGGATTATGCATAGGGTTGTTGGGCATAAGGGGGGTGGGTTTTTGATGGATCAGGAGAATAATGTTTATGGGGTGAGTGAGGAGATGGAGGGGGAGGGAGGGTTTGGGGGGTTGTTGGGGAAGGAGGATGGTGGTGGGGATTTGCAGTTTTCGGTGATGCAGCAGGTGCAGGAGTTGAGGAATGAGGTGGGGATGTTAGAAGGGAAGGTTGGGAAGATGCCAAGGGAGATGTTGGGGGCTATTTCGAGGGAGTTGTTCGAGGTTTTGAATAAGGTTAGGAGTATTGGGGAGGTGGGGTTGAAGCCGGGGATTGAGTTGATTGCAGATAAGGCTGTGGCACACGGGGTGGTGGAGGATGATGTGTTGGTTGGGGACAATGATTTGGCTAACTGGAGCAATCATCACGAGAGGATTTATGGGGATGGCAAGGACACCGAGCTGATTGAGGATGACGAGGATAGTTTTGGCCGGACGCTGGGAGAGGTTGTTTCGTGGGGTGATCAGATGACGACAGAGTGCAGGAGTCAGAAGGATGATCTGATGAGTGACACTTGTAAGCCGGAGAAGTGGTTGAAATGCAGCGACTTTGATGAGAAAAGCATTCTTGATTGTGAGGACAGTAAACTAACCAAGCCCGTTAGATTGATCAGACACGACGAGGGTATAGTGTCGGATGTAGTAGGTCTTGGCTGTATGCAGGTTGACAGTTTCTACCCGGACAACCCTAAATGGTATGATTCTCCTTGTGCTTTGGATACTGGTGCTGATTGTGGAGATAGTGCATTCCGTCATGGAGAGATTTTATAG

Predicted protein sequences of Glyma01g34506

Limit To All Plant Sequences

>Glyma01g34506.1   sequence type=predicted peptide   gene model=Glyma01g34506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNSKKQEEEDEVFLPHPPDLSPPHPPDASFSLLFPSSPSSSHSSPSPSSPPKPLFISPDPHISSQFYTFTPSSHALMLRSLLLRRLPSPSDIRSATPRSVLSSWRTVWKDRNEDTAYLTAWKRIQDKLTTHHDPDSNTHFLCFKNNPHQFVPHVNQWQHIVMSHHSDSDLCHLNLKDTLDRIKHHWTVGAKFYGIPESFIRVCVAACPVCSSATTEGGSSDPSVAARGKRRRFEYTESFDVPAREVPSRLQQLAAKHKVVLCIRQKYIRYKPFMAEVKDYACHRAGEPAAKKSKVLKREPYASKRCGCGFRIRAIVPIANYNEKDKSFVYQEEGVAVFKLYAVHSGHEPGPLDGNARIMHRVVGHKGGGFLMDQENNVYGVSEEMEGEGGFGGLLGKEDGGGDLQFSVMQQVQELRNEVGMLEGKVGKMPREMLGAISRELFEVLNKVRSIGEVGLKPGIELIADKAVAHGVVEDDVLVGDNDLANWSNHHERIYGDGKDTELIEDDEDSFGRTLGEVVSWGDQMTTECRSQKDDLMSDTCKPEKWLKCSDFDEKSILDCEDSKLTKPVRLIRHDEGIVSDVVGLGCMQVDSFYPDNPKWYDSPCALDTGADCGDSAFRHGEIL*

>Glyma01g34506.2   sequence type=predicted peptide   gene model=Glyma01g34506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNSKKQEEEDEVFLPHPPDLSPPHPPDASFSLLFPSSPSSSHSSPSPSSPPKPLFISPDPHISSQFYTFTPSSHALMLRSLLLRRLPSPSDIRSATPRSVLSSWRTVWKDRNEDTAYLTAWKRIQDKLTTHHDPDSNTHFLCFKNNPHQFVPHVNQWQHIVMSHHSDSDLCHLNLKDTLDRIKHHWTVGAKFYGIPESFIRVCVAACPVCSSATTEGGSSDPSVAARGKRRRFEYTESFDVPAREVPSRLQQLAAKHKVVLCIRQKYIRYKPFMAEVKDYACHRAGEPAAKKSKVLKREPYASKRCGCGFRIRAIVPIANYNEKDKSFVYQEEGVAVFKLYAVHSGHEPGPLDGNARIMHRVVGHKGGGFLMDQENNVYGVSEEMEGEGGFGGLLGKEDGGGDLQFSVMQQVQELRNEVGMLEGKVGKMPREMLGAISRELFEVLNKVRSIGEVGLKPGIELIADKAVAHGVVEDDVLVGDNDLANWSNHHERIYGDGKDTELIEDDEDSFGRTLGEVVSWGDQMTTECRSQKDDLMSDTCKPEKWLKCSDFDEKSILDCEDSKLTKPVRLIRHDEGIVSDVVGLGCMQVDSFYPDNPKWYDSPCALDTGADCGDSAFRHGEIL*

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