Glyma01g34490 - SoyBase

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Report for Sequence Feature Glyma01g34490

Feature Type:	gene_model
Chromosome:	Gm01
Start:	46835874
stop:	46838757
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g34490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62020	AT	Annotation by Michelle Graham. TAIR10: heat shock transcription factor B2A \| chr5:24916212-24917194 FORWARD LENGTH=299	SoyBase	E_val: 6.00E-38	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_G7ZZ89	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat stress transcription factor A-2c n=1 Tax=Medicago truncatula RepID=G7ZZ89_MEDTR	SoyBase	E_val: 2.00E-104	ISS
UniRef100_I1J7X9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7X9_SOYBN	SoyBase	E_val: 4.00E-153	ISS

Expression Patterns of Glyma01g34490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g34490 not represented in the dataset	Glyma01g34490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g34490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g143500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g34490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g34490

Limit To All Plant Sequences

>Glyma01g34490.1   sequence type=CDS   gene model=Glyma01g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAATAATTATAGTGTGTTAGAGCTCAACCTTGGTTTAGGCAACAACAACGTTGGTGGTCATGCAGGGCAATCACCAAGGCAAAGGTGCCCCGCACCGTTTCTGTTGAAAACGTACGATTTGTTGGAAGAATTAGGTGAGAACATTGAAGATAGCACCAAAATTGTGTCGTGGAATGCAGAAGGAACTGGCTTTGTTGTGTGGTCTCCATCTGAGTTCTCTGAGCTCACCTTGCCCAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTTAAGAAAATATCATCAAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCACATGTTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTGCATACCTCAAGTCTTCTTCTGAGGAAAATAATGCAACGAGTTCCACGGAAGAAAACAATGATCATCAACTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGCTGCAAGTGCAAATAGATGAATGCAAAGCACTTGAAATGAAGTTGTTGGAATGTCTCTCTCAGTTTATGGACACCCACCAAAATAAAGTTAGGAGACTATGTTAA

Predicted protein sequences of Glyma01g34490

Limit To All Plant Sequences

>Glyma01g34490.1   sequence type=predicted peptide   gene model=Glyma01g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNYSVLELNLGLGNNNVGGHAGQSPRQRCPAPFLLKTYDLLEELGENIEDSTKIVSWNAEGTGFVVWSPSEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENNATSSTEENNDHQLLMEENKNLKKERLELQVQIDECKALEMKLLECLSQFMDTHQNKVRRLC*

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