Glyma01g34410 - SoyBase

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Report for Sequence Feature Glyma01g34410

Feature Type:	gene_model
Chromosome:	Gm01
Start:	46764768
stop:	46772182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g34410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12080	AT	Annotation by Michelle Graham. TAIR10: AT-hook motif nuclear-localized protein 1 \| chr4:7239466-7241246 FORWARD LENGTH=356	SoyBase	E_val: 2.00E-97	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9RDD7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDD7_RICCO	SoyBase	E_val: 8.00E-134	ISS
UniRef100_C6TIZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g34410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g34410

Paralog	Evidence	Comments
Glyma03g02670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g34410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g143100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g34410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g34410

Limit To All Plant Sequences

>Glyma01g34410.3   sequence type=transcript   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTAATTTAAATACACTTTATCACCCTTGTTTTTCTCTCCCTTATTTTTAATTGCTGTAACAGTAGTAGTATTTATTTTGAGCTTTCCATTTTTCTCTCTTTTTCAACTTTCAATTCAAGCAGCTTTGGAAAAACCAACCAGCCAACGGGTTTTTTTCACCTCCTGAAATTTTTGAGTTAATGAGTATCTTGTTGAGCTGAAAAAGAAATCTGAATACAAGTTTTCAGCTTTGGAAGAAGCTTGCTCAAGTGTGGAATCACAGTGACAGGTGTTGGTTTGGTAATATAGGCCTTGGAGTGGAAATTCAATATTTGTATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTACCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGCTGCTGCTACAGCTGCACCTGTTGGTGTCTCACCTGTGAGTGCGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCTGATGGGTCAGTCACTATGGCATTGTCACCAATGCCAATTTCGTCGTCGGCTCCGCCTTCTAATGACTTTTCCTCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCATCAAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATCACGATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACTGGTGGAATGTCGGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGTCAAAGTCTAGCGATTATGGAGTAGCAACTGTTACTCCAACCATTGCAGTGTCTCCTACACCACCACCTCCAACCAATGCCGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTTAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCCACTGATATTAACATATCTTTGCCTGATAGTTAAGTTGATGTTCGACGCTCACTCTCGATCCTCAAGAACTCTTGCTGACAACATTCATGACTCAGCTGTTTTATTAATGTTTACAGTGTTCTCTCTCTTATCTAAAGATTGTTTCAAACGTGTCTGATGTTTATTACCATAGGATTTAGTTTCAGTGTTGTAAGTTGCAGCTAGTTAGAGTATCTGATATATTTATCGGCTGATTAGGTAGATGCTGCATTCTGCAGAATTATGAGTAGGCTAATTCGGATGTAATGAAAACTTGTTTGCATATTTATTTATGACTGAATTTGTGGAAGAATTTGCCTTTTAAGTTTGTTATGTTTTCTTCTATTTGGTATGTTGAGGTTTGTTAGTTGTTACTACAGTTTAAGGATGTGCTTTGATGACATTCAAAAATATAAAAAAG

>Glyma01g34410.4   sequence type=transcript   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTAATTTAAATACACTTTATCACCCTTGTTTTTCTCTCCCTTATTTTTAATTGCTGTAACAGTAGTAGTATTTATTTTGAGCTTTCCATTTTTCTCTCTTTTTCAACTTTCAATTCAAGCAGCTTTGGAAAAACCAACCAGCCAACGGGTTTTTTTCACCTCCTGAAATTTGTGTTGGTTTGGTAATATAGGCCTTGGAGTGGAAATTCAATATTTGTATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTACCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGCTGCTGCTACAGCTGCACCTGTTGGTGTCTCACCTGTGAGTGCGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCTGATGGGTCAGTCACTATGGCATTGTCACCAATGCCAATTTCGTCGTCGGCTCCGCCTTCTAATGACTTTTCCTCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCATCAAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATCACGATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACTGGTGGAATGTCGGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGTCAAAGTCTAGCGATTATGGAGTAGCAACTGTTACTCCAACCATTGCAGTGTCTCCTACACCACCACCTCCAACCAATGCCGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTTAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCCACTGATATTAACATATCTTTGCCTGATAGTTAAGTTGATGTTCGACGCTCACTCTCGATCCTCAAGAACTCTTGCTGACAACATTCATGACTCAGCTGTTTTATTAATGTTTACAGTGTTCTCTCTCTTATCTAAAGATTGTTTCAAACGTGTCTGATGTTTATTACCATAGGATTTAGTTTCAGTGTTGTAAGTTGCAGCTAGTTAGAGTATCTGATATATTTATCGGCTGATTAGGTAGATGCTGCATTCTGCAGAATTATGAGTAGGCTAATTCGGATGTAATGAAAACTTGTTTGCATATTTATTTATGACTGAATTTGTGGAAGAATTTGCCTTTTAAGTTTGTTATGTTTTCTTCTATTTGGTATGTTGAGGTTTGTTAGTTGTTACTACAGTTTAAGGATGTGCTTTGATGACATTCAAAAATATAAAAAAG

Coding sequences of Glyma01g34410

Limit To All Plant Sequences

>Glyma01g34410.2   sequence type=CDS   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTACCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGCTGCTGCTACAGCTGCACCTGTTGGTGTCTCACCTGTGAGTGCGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCTGATGGGTCAGTCACTATGGCATTGTCACCAATGCCAATTTCGTCGTCGGCTCCGCCTTCTAATGACTTTTCCTCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCATCAAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATCACGATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACTGGTGGAATGTCGGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGTCAAAGTCTAGCGATTATGGAGTAGCAACTGTTACTCCAACCATTGCAGTGTCTCCTACACCACCACCTCCAACCAATGCCGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTTAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCCACTGATATTAACATATCTTTGCCTGATAGTTAA

>Glyma01g34410.3   sequence type=CDS   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTACCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGCTGCTGCTACAGCTGCACCTGTTGGTGTCTCACCTGTGAGTGCGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCTGATGGGTCAGTCACTATGGCATTGTCACCAATGCCAATTTCGTCGTCGGCTCCGCCTTCTAATGACTTTTCCTCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCATCAAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATCACGATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACTGGTGGAATGTCGGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGTCAAAGTCTAGCGATTATGGAGTAGCAACTGTTACTCCAACCATTGCAGTGTCTCCTACACCACCACCTCCAACCAATGCCGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTTAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCCACTGATATTAACATATCTTTGCCTGATAGTTAA

>Glyma01g34410.4   sequence type=CDS   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTACCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGCTGCTGCTACAGCTGCACCTGTTGGTGTCTCACCTGTGAGTGCGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGGCCGAGGAAATATGGGCCTGATGGGTCAGTCACTATGGCATTGTCACCAATGCCAATTTCGTCGTCGGCTCCGCCTTCTAATGACTTTTCCTCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAGCCATCAAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATCACGATGAAGGTGATATCCTTTTCTCAACAAGGACCACGAGCTATATGTATCTTATCTGCTAATGGTGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGACTGGTGGAATGTCGGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGCGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAAATAAAGAAGTCAAAGTCTAGCGATTATGGAGTAGCAACTGTTACTCCAACCATTGCAGTGTCTCCTACACCACCACCTCCAACCAATGCCGAAAAAGAGGATGTGAATGTTATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTTAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGTCAGCCACTGATATTAACATATCTTTGCCTGATAGTTAA

Predicted protein sequences of Glyma01g34410

Limit To All Plant Sequences

>Glyma01g34410.2   sequence type=predicted peptide   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKIKKSKSSDYGVATVTPTIAVSPTPPPPTNAEKEDVNVMGGAHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS*

>Glyma01g34410.3   sequence type=predicted peptide   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKIKKSKSSDYGVATVTPTIAVSPTPPPPTNAEKEDVNVMGGAHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS*

>Glyma01g34410.4   sequence type=predicted peptide   gene model=Glyma01g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGAAATAAPVGVSPVSAGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKIKKSKSSDYGVATVTPTIAVSPTPPPPTNAEKEDVNVMGGAHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS*

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