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Report for Sequence Feature Glyma01g34360

Feature Type:gene_model
Chromosome:Gm01
Start:46742638
stop:46747004
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g34360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02390AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase zeta 1 | chr2:629015-630955 FORWARD LENGTH=221 SoyBaseE_val: 8.00E-63ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
KOG0868 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF24Panther SUBFAMILY NOT NAMED JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_F5CRR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zeta class glutathione S-transferase protein n=1 Tax=Bruguiera gymnorhiza RepID=F5CRR1_BRUGY SoyBaseE_val: 1.00E-99ISS
UniRef100_UPI0001BA8B11UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA8B11 related cluster n=1 Tax=unknown RepID=UPI0001BA8B11 SoyBaseE_val: 8.00E-163ISS

Expression Patterns of Glyma01g34360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g34360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g142800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g34360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g34360
>Glyma01g34360.2   sequence type=CDS   gene model=Glyma01g34360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTAGATTTGCGGAAAAGTGGCCATGGCATTGGCAGCAATGCATCACTGCAATCCAATCTTGTGCTGTATTCTTACTGTCATAGCTCTTGCTCATGGCGTATTCGATTTGCTTTATCCCTCAAAGGGATCCCATATGAGTACAAAGCAGTGGATCTTTCAAAAGGAGAGCAGTACAGTCCAGAATTCGAGAGATTGAATCCTCTGCACTATGTTCCAGTATTGGTTGATGATAATGTGGTGGTTTCAGACTCTTATGCAATATTTCTGCATTTGGAGGAAAAATATACTCAGAAGCCACTGTTGCCAGTTGATCCTCAGCTTAGAGCTCTCAATCTTCAGGTAGCTAGTATTATTCACTCCAGTATACAGCCTCTTCATATGCTTAATGTTCTGAAAGATATGGAGAAAATGTTTTGTGCAGAATCAAAACCATGGGCCCAATTTACCATTGACAAAGGTTTCTCAGCTCTTGAAAAATTACTGAAGGATTTTGCTGGTACATATGCCACAGGAGAACATATCTATATGATTACACTGGCAGTTCAGAGATTTGATATTGATATGTCCAAATTCCCTACCCTTAGTAGATTGTATGAAACATACAAAGCTTTGCCAGAGTTCCAAGCCTCATCACCACAAAGACAACCTGATGCCTTGATTCATAACCCTTGA
Predicted protein sequences of Glyma01g34360
>Glyma01g34360.2   sequence type=predicted peptide   gene model=Glyma01g34360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDLRKSGHGIGSNASLQSNLVLYSYCHSSCSWRIRFALSLKGIPYEYKAVDLSKGEQYSPEFERLNPLHYVPVLVDDNVVVSDSYAIFLHLEEKYTQKPLLPVDPQLRALNLQVASIIHSSIQPLHMLNVLKDMEKMFCAESKPWAQFTIDKGFSALEKLLKDFAGTYATGEHIYMITLAVQRFDIDMSKFPTLSRLYETYKALPEFQASSPQRQPDALIHNP*






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