Report for Sequence Feature Glyma01g34340
Feature Type: gene_model
Chromosome: Gm01
Start: 46707890
stop: 46726051
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g34340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02010 AT
Annotation by Michelle Graham. TAIR10: secretory 1A | chr1:348046-352197 FORWARD LENGTH=673
SoyBase E_val: 0 ISS
GO:0006904 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis
SoyBase N/A ISS
GO:0009306 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein secretion
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein transporter activity
SoyBase N/A ISS
KOG1300
KOG
Vesicle trafficking protein Sec1
JGI ISS
PTHR11679 Panther
VESICLE PROTEIN SORTING-ASSOCIATED
JGI ISS
PTHR11679:SF5 Panther
gb def: vacuolar sorting protein essential for vacuolar morphogenesis and function, vps3
JGI ISS
PF00995 PFAM
Sec1 family
JGI ISS
UniRef100_G7JDE5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: SNARE-interacting protein KEULE n=1 Tax=Medicago truncatula RepID=G7JDE5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023370A6 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023370A6 related cluster n=1 Tax=unknown RepID=UPI00023370A6
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g34340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g34340
Paralog Evidence Comments
Glyma03g02740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g34340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g142600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g34340
Coding sequences of Glyma01g34340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g34340.2 sequence type=CDS gene model=Glyma01g34340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCATCTTTATCCGATTCCGAAACGTCGTCCACCGGTGCAACGGAGTACAGGCCTTTCCGCCATATCAGTCGCGATCGTTTATTATATGAAATGCTTAAATCGGCAAAGTCACCTGATTCGAAAGCATGGAAGGTGCTAATAATGGATAAAGTCACGGTGAAAGTTATGTCACATTCATGTAAAATGGCAGATATTACAGACCAAGAAATTTCCTTGGTGGAAGACCTATTCCGGAGAAGGCAACCATTACCATCTTTGGATGCTGTTTATTTCATGCAGCCTTCTAAAGAGAATGTGGTCATGTTCCTGTCTGATATGTCTGGAAGGGAGCCCCTGTATAAGAAAGCCTATGTATTTTTCAGTTCACCAATCCCAAAGGAACTTGTAAACCACATCAAGTGTGATACAAGTGTCTTACCCCGCATAGGTGCACTGAGAGAGATGAATTTGGAATATTTTCCAATTGATAGCCAGGGTTTTATCACTGATCAAGAAACAGCAATGGAAGAACTTTATGGCAATGTTGAGAATACTCGCAGATTTAACACCAGCTTGAATACTATGTCTATTCGAATAGCTACAGTTTTTGCTTCATTGAAGGAGTTGCCATGTGTGTGGCATCGTGCTGCAAAGGATAGTGACGAGTCTACAGCAGCAGCGGTTCGTGAATTAGTTCCTACCAAGCTTGCTAATGCTGTTTGGGACATGGTTTCTAAATATAAATCTACCATTCCCGGTTTTCCACAAAATGAAACTTGTGATATGCTCATTGTTGACAGATCCATAGATCAGATTGCACCTGTCATTCATGAATGGACCTATGATGCTATGTGCCATGATTTGTTGAATATGGATGGAGATAAATATATGCATGAGGTTCCCAGCAAAGTCGGGGGCCAACCTGAGATAAAGGAGGTTATTCTACAAGACCATGATTCTGTTTGGCTTGAACTACGCCACACTCATATAGCGGATGCTAGTGAAAGACTGCATGAAAAGTTTACCAATTTCGTATCAAAGAACAAAGCAGCACAAATTCAGCAAAGCGGAAGAGATGGTAGTGAATTATCTACTCGAGATTTGCAAAAAATGGTTCAAGCTTTGCCCCAATACACTGAACAAGTGGAAAAGATCTCACTTCATGTAGAGATAGCTGGAAAGATTAACAAAATTATCAGAGAAACGGACCTTCGAGAGCTTGGACAGTTGGAACAAGATCTTGTTTTTGGGGATGCTGGAGCCAAGGAAGTTATTAACTTTTTAAGAACAAAGCAGAACACGTCTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAGCTAATGCAGTTGGCAAAACTATCACCTGATGACATGAAAGTTATCAGTAATATGCAACTTCTGGCGGGATCATCAAACAAGAAATCATCTGCTGCTGGTGGTTTCTCACTCAAGTTCAGTAACCAGAAGACAAAACAAGCAGCGCGCAAAGATCGTACTGAAGAGGAAGAAACATGGCAATTATTTCGATTTTATCCCATGTTAGAGGAGCTCATTGAAAATCTCATCAAGGGTGAATTGCCAAAGAATGAATATTCCTGTATAAATGAGCCAAGTCCTAGTAATGCCCGAGGTTCTGTTAGAATCAGACAACAGACCCAGACAGCTCCAACCACTGCTCCTCATTCAATGAGATCTAGGAGGACTGCAAACTGGGGACGAGCTCGTACTTCAGATGATGGATATTCAAGTGACTCCACATTGAAGAATGTGACTACTGATTTCAAAAGGATGGGCAAGCGAATCTTTGTGTTTATCATTGGTGGGGCTACTCGATCAGAGCTGCGAGTTTGTCACAAGTTGACACAAAAATTAAAAAGGGAAGTAATCCTAGGTACTACTTCCATGGACGATCCTCCACAATATCTTACGAAATTAAAGTTATTGCTCGACAGCAATGTTACACAGCGGGATGGCCTCGGGATATAA
Predicted protein sequences of Glyma01g34340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g34340.2 sequence type=predicted peptide gene model=Glyma01g34340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSLSDSETSSTGATEYRPFRHISRDRLLYEMLKSAKSPDSKAWKVLIMDKVTVKVMSHSCKMADITDQEISLVEDLFRRRQPLPSLDAVYFMQPSKENVVMFLSDMSGREPLYKKAYVFFSSPIPKELVNHIKCDTSVLPRIGALREMNLEYFPIDSQGFITDQETAMEELYGNVENTRRFNTSLNTMSIRIATVFASLKELPCVWHRAAKDSDESTAAAVRELVPTKLANAVWDMVSKYKSTIPGFPQNETCDMLIVDRSIDQIAPVIHEWTYDAMCHDLLNMDGDKYMHEVPSKVGGQPEIKEVILQDHDSVWLELRHTHIADASERLHEKFTNFVSKNKAAQIQQSGRDGSELSTRDLQKMVQALPQYTEQVEKISLHVEIAGKINKIIRETDLRELGQLEQDLVFGDAGAKEVINFLRTKQNTSPEYKLRLLMIYASVYPEKFEGDKASKLMQLAKLSPDDMKVISNMQLLAGSSNKKSSAAGGFSLKFSNQKTKQAARKDRTEEEETWQLFRFYPMLEELIENLIKGELPKNEYSCINEPSPSNARGSVRIRQQTQTAPTTAPHSMRSRRTANWGRARTSDDGYSSDSTLKNVTTDFKRMGKRIFVFIIGGATRSELRVCHKLTQKLKREVILGTTSMDDPPQYLTKLKLLLDSNVTQRDGLGI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
