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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71820 | AT | Annotation by Michelle Graham. TAIR10: SEC6 | chr1:27010022-27016745 FORWARD LENGTH=752 | SoyBase | E_val: 0 | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0000145 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: exocyst | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2286 | KOG | Exocyst complex subunit SEC6 | JGI | ISS | |
| PTHR21292 | Panther | EXOCYST COMPLEX COMPONENT SEC6-RELATED | JGI | ISS | |
| PTHR21292:SF1 | Panther | EXOCYST COMPLEX COMPONENT SEC6 | JGI | ISS | |
| PF06046 | PFAM | Exocyst complex component Sec6 | JGI | ISS | |
| UniRef100_G7JEN0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exocyst complex subunit SEC6 n=1 Tax=Medicago truncatula RepID=G7JEN0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JKP1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKP1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g33866 not represented in the dataset |
Glyma01g33866 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g03120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g140600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g33866.2 sequence type=transcript gene model=Glyma01g33866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTATAATAAATATTATTTTAATTTTTGTTTCTCTAATAAATGCTTTCAAGAATATACTTATTAATTTTTTTAATTAGAAAATCAGACCAATGCGGCAACACCATCATGTTCATGTGTGTGACGGAAAATTAGTAACATCCGCAGCAGTGGCCTGGCTTATAAGTCCTAAAATCCTAATTCATTGCTGCATCCATTGTGAGAGATAGTGTCAAAGTGAAGTAGAGACTAGAGGGGGAAAGGGAAATGGCATCTTTAGTGTCACAGTCCTCACGGACGAGAAACCGCTATAGGAGCGGGATTGCGTCTGACCCTGAGATGTAGATCCTCCGAGGCTCATTAGCATGACATACTTTTCTTCTTTGAACCGGGGTTTGAAACCAAATTATCCTCAGGAGGATAAATAGGGCTATTTAGGTGAGATCCAATGTAGATTCAACTTTCTCTTCACTCGTGGAATCTAGAGCTTTGCCGTGCCGAGATCTCGGCCACCTCACCAAACCGAGAGGAAACAACATTTGCATAGATTTAGGTGAGATCCAATGCATATCCAACTTTCTCTTCACTCGTGGGATCCAAGTGATACAGGGCTCTTCTGTGTTGGGATTGCGGCCACTCCTACCGCTTCACCAAACTGAGATGCGAAAACGTTTGCATAGTGGCTCACCAGTGCTTTACTTTGCTCCACCGCTATTGCGCCTGTTATGACTGCTATTGACTACTATGATCTTTATTATATTAAAGAATCACTTTTTTGAATGTACATGGAATGCTGGTGTAATGCCCTCCTTAGTTGGGTGATATACTCTTGAGCAGGGATGAATGCTGGGGAAGTTGTTTGTTTGTGCTTGCCCACAGACTTTAGTTCGTGCTGTACGGGTTGTTGAAATGCAAGAGATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGTGCAATGGCATCAGTTGCAAATCCTCGTAACAACGGCATAAAATCTACAAGTTCAATGGCTTCTTCAAAAAATTTAATGCAGCAAAAATTGAAGGTTCAGGGGAAAGGCTATAAGGATAAATGCTATGAGCAAATAAGGAAGACTGTAGAAGGACGGTTTAACAAGCTTCTCAATGAGCTTGTGTTTGAGGACCTGAAAGCAGCTTTAGAGGCAGCACGAGCGATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGATACGAAATATTCCAATTAATGGTAAATCTGTACACTGAGAGATTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGGTAACTGGTTGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTTGATGAGTCTCTAGCCCAAGTGTGCTCCGAGAGTGGTGCAATGGATCCTCTTATGAATTCTTATGTTGAGAGAATGCAAGCTACGACTAGGAAATGGTACCTGAATATTTTGGAGGCTGATAGAACACAGCCCCCAAAGAAAACTGAAGATGGGAAGCTATATACCCCAGCTGCTGTTGATCTCTTCAGGATACTTGGTGAGCAAGTACAAATTGTTCGGGATAATAGCACTGATCTCATGTTATACAGAATTGCCTTGGCAACCATTCAGGTGATGATTGATTTTCAAGCAGCCGAAAAGAAGAGACTTGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTATGCTGAGCAGGTTAATTTCGAAGATACCTGTAAGGGTTTTCTTGAGGTAGCCAAGGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGGGTCCAGGAGTTGCTGGTGAAGCTATACCAGAAAGAATGGAGTGAGGGGCAGGTTACTGAGTACCTGGTTGCAACATTTGGTGATTATTTTGGTGATGTAAAAATGTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAAGAAACAGTGGTTGTTTATGTTGATCGTCTTTTAACACAGAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGATTTTTTTAGGGAACATATCAGTGTTTCTAAAGTTGAAAACAGAGTGAGTGTACTCAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGCCTGAAGTTGTAGAGAAACTCGTTGGTCTACGAGAGGGCATTCCTCGGAAGGATGCCAAGGAGGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTCGATGGAAGACCTCCAAAGGCAGGTTTTGTTTTTCGACGGGTGAAGTGCCTAACAGCAACCAAGGGAGGGCTTTGGCGTAAACTCACTTGAAGTACGATTCCATTCAGTTATTCATATAGCTTGTTTTGCCTGTTAAATTATTTGTTCCTTGTGCCTAATTCCCAAATGTTTTGCTGTCAATAGAAAAGTTTTGTAAAATTCATTTAAACAAGTCCGTAGTTCATGACACCCTCAGTTTATTTCAGCTCCCGTTCTCAGTTTTACCTTGAACCAAATGTGCTGTTGACATTTTCAAGATTACCTACCTCTCTGGGTGATTGTATTCAAAAGAATTAAAACAGTTAATCTTGTTTGCTTAACGTTGGAAACCACGTAGGTTCTGAATGTAATCCGGGAATATTTTTGTTCTGTGCGATTTAGGGTTTTTTTTTTTAAATTAGGAATGACACTAGATAGGATCTTATAATACTCATCCCCATACCCATTTCTAAAAATATTACTCTTTATCGGTTTCATACTCGCACAGTAACAATTTTAATTTTCATTCCTGTTGCATACTTATATACCTATTCCTG
>Glyma01g33866.1 sequence type=CDS gene model=Glyma01g33866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCTGAGGATCTCGGCGTGGAGGCGAAGGAGGCCGCGGTTCGCGAGGTCGCCAAGCTGTTGCCGCTTCCGGAGCTTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGGCCAATGATGCACAGCTTAGTACAATGGTTGCCGAACAGGTTGAGCAGTCACAGGCAGGACTAAAATCGCTCTCCTTCTCTGAGAAGACAATAAATCAGCTTCGTGAAAACTTTGTCTCCATTGAGAATTTATGTCAGGAATGCCAAACATTAATTGACAACCATGATCAGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAGGATGTTGAAGGTATGATGTCTATCTCTGATGAGGCAGCCGAGGCTCGGGATTCTTTGAGTGATGACAAAGAAATCGTCAACACTTACGAGAGGTTAACAGCTTTGGATGGAAAACGAAGGTTTGCTTTAGCAGCTGCTGGATCTCACAAGGAAGAGATTGGAAGGCTAAGAGAATATTTTGAAGATGTAGATCGAACTTGGGAGACCTTTGAGAAAACGCTATGGGGCCACATTTCCAATTTTTATAAACTCTCCAAAGAAAGCCCACAGACTTTAGTTCGTGCTGTACGGGTTGTTGAAATGCAAGAGATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGTGCAATGGCATCAGTTGCAAATCCTCGTAACAACGGCATAAAATCTACAAGTTCAATGGCTTCTTCAAAAAATTTAATGCAGCAAAAATTGAAGGTTCAGGGGAAAGGCTATAAGGATAAATGCTATGAGCAAATAAGGAAGACTGTAGAAGGACGGTTTAACAAGCTTCTCAATGAGCTTGTGTTTGAGGACCTGAAAGCAGCTTTAGAGGCAGCACGAGCGATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGATACGAAATATTCCAATTAATGGTAAATCTGTACACTGAGAGATTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGGTAACTGGTTGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTTGATGAGTCTCTAGCCCAAGTGTGCTCCGAGAGTGGTGCAATGGATCCTCTTATGAATTCTTATGTTGAGAGAATGCAAGCTACGACTAGGAAATGGTACCTGAATATTTTGGAGGCTGATAGAACACAGCCCCCAAAGAAAACTGAAGATGGGAAGCTATATACCCCAGCTGCTGTTGATCTCTTCAGGATACTTGGTGAGCAAGTACAAATTGTTCGGGATAATAGCACTGATCTCATGTTATACAGAATTGCCTTGGCAACCATTCAGGTGATGATTGATTTTCAAGCAGCCGAAAAGAAGAGACTTGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTATGCTGAGCAGGTTAATTTCGAAGATACCTGTAAGGGTTTTCTTGAGGTAGCCAAGGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGGGTCCAGGAGTTGCTGGTGAAGCTATACCAGAAAGAATGGAGTGAGGGGCAGGTTACTGAGTACCTGGTTGCAACATTTGGTGATTATTTTGGTGATGTAAAAATGTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAAGAAACAGTGGTTGTTTATGTTGATCGTCTTTTAACACAGAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGATTTTTTTAGGGAACATATCAGTGTTTCTAAAGTTGAAAACAGAGTGAGTGTACTCAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGCCTGAAGTTGTAGAGAAACTCGTTGGTCTACGAGAGGGCATTCCTCGGAAGGATGCCAAGGAGGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTCGATGGAAGACCTCCAAAGGCAGGTTTTGTTTTTCGACGGGTGAAGTGCCTAACAGCAACCAAGGGAGGGCTTTGGCGTAAACTCACTTGA >Glyma01g33866.2 sequence type=CDS gene model=Glyma01g33866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGGGAAGTTGTTTGTTTGTGCTTGCCCACAGACTTTAGTTCGTGCTGTACGGGTTGTTGAAATGCAAGAGATCCTTGATCAACAGATTGCAGAAGAAGCAGCTGAGGCTGAAGGGGATGGTGCAATGGCATCAGTTGCAAATCCTCGTAACAACGGCATAAAATCTACAAGTTCAATGGCTTCTTCAAAAAATTTAATGCAGCAAAAATTGAAGGTTCAGGGGAAAGGCTATAAGGATAAATGCTATGAGCAAATAAGGAAGACTGTAGAAGGACGGTTTAACAAGCTTCTCAATGAGCTTGTGTTTGAGGACCTGAAAGCAGCTTTAGAGGCAGCACGAGCGATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGATACGAAATATTCCAATTAATGGTAAATCTGTACACTGAGAGATTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGGTAACTGGTTGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTTGATGAGTCTCTAGCCCAAGTGTGCTCCGAGAGTGGTGCAATGGATCCTCTTATGAATTCTTATGTTGAGAGAATGCAAGCTACGACTAGGAAATGGTACCTGAATATTTTGGAGGCTGATAGAACACAGCCCCCAAAGAAAACTGAAGATGGGAAGCTATATACCCCAGCTGCTGTTGATCTCTTCAGGATACTTGGTGAGCAAGTACAAATTGTTCGGGATAATAGCACTGATCTCATGTTATACAGAATTGCCTTGGCAACCATTCAGGTGATGATTGATTTTCAAGCAGCCGAAAAGAAGAGACTTGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTATGCTGAGCAGGTTAATTTCGAAGATACCTGTAAGGGTTTTCTTGAGGTAGCCAAGGAAGCTGTGCATCAAACTGTCAGTGTGATATTTGAAGATCCTGGGGTCCAGGAGTTGCTGGTGAAGCTATACCAGAAAGAATGGAGTGAGGGGCAGGTTACTGAGTACCTGGTTGCAACATTTGGTGATTATTTTGGTGATGTAAAAATGTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAAGAAACAGTGGTTGTTTATGTTGATCGTCTTTTAACACAGAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGATTTTTTTAGGGAACATATCAGTGTTTCTAAAGTTGAAAACAGAGTGAGTGTACTCAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGCCTGAAGTTGTAGAGAAACTCGTTGGTCTACGAGAGGGCATTCCTCGGAAGGATGCCAAGGAGGTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTCGATGGAAGACCTCCAAAGGCAGGTTTTGTTTTTCGACGGGTGAAGTGCCTAACAGCAACCAAGGGAGGGCTTTGGCGTAAACTCACTTGA
>Glyma01g33866.1 sequence type=predicted peptide gene model=Glyma01g33866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMAEDLGVEAKEAAVREVAKLLPLPELLQSISSIKADYISRQQANDAQLSTMVAEQVEQSQAGLKSLSFSEKTINQLRENFVSIENLCQECQTLIDNHDQIKILSNARNNLNTTLKDVEGMMSISDEAAEARDSLSDDKEIVNTYERLTALDGKRRFALAAAGSHKEEIGRLREYFEDVDRTWETFEKTLWGHISNFYKLSKESPQTLVRAVRVVEMQEILDQQIAEEAAEAEGDGAMASVANPRNNGIKSTSSMASSKNLMQQKLKVQGKGYKDKCYEQIRKTVEGRFNKLLNELVFEDLKAALEAARAIGEELGDVYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVDESLAQVCSESGAMDPLMNSYVERMQATTRKWYLNILEADRTQPPKKTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDLMLYRIALATIQVMIDFQAAEKKRLEEPASEIGLEPLCAMINNNLRCYDLAMELSNSTIEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVQELLVKLYQKEWSEGQVTEYLVATFGDYFGDVKMYIEERSFRRFVEACLEETVVVYVDRLLTQKNYIKEETIERMRLDEEVIMDFFREHISVSKVENRVSVLSDLRELASAESLDTFTLIYTNILEHQPDCPPEVVEKLVGLREGIPRKDAKEVIQECKEIYENSLVDGRPPKAGFVFRRVKCLTATKGGLWRKLT* >Glyma01g33866.2 sequence type=predicted peptide gene model=Glyma01g33866 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLGKLFVCACPQTLVRAVRVVEMQEILDQQIAEEAAEAEGDGAMASVANPRNNGIKSTSSMASSKNLMQQKLKVQGKGYKDKCYEQIRKTVEGRFNKLLNELVFEDLKAALEAARAIGEELGDVYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVDESLAQVCSESGAMDPLMNSYVERMQATTRKWYLNILEADRTQPPKKTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDLMLYRIALATIQVMIDFQAAEKKRLEEPASEIGLEPLCAMINNNLRCYDLAMELSNSTIEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVQELLVKLYQKEWSEGQVTEYLVATFGDYFGDVKMYIEERSFRRFVEACLEETVVVYVDRLLTQKNYIKEETIERMRLDEEVIMDFFREHISVSKVENRVSVLSDLRELASAESLDTFTLIYTNILEHQPDCPPEVVEKLVGLREGIPRKDAKEVIQECKEIYENSLVDGRPPKAGFVFRRVKCLTATKGGLWRKLT*
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