Glyma01g33520 - SoyBase

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Report for Sequence Feature Glyma01g33520

Feature Type:	gene_model
Chromosome:	Gm01
Start:	45685076
stop:	45692774
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g33520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45240	AT	Annotation by Michelle Graham. TAIR10: methionine aminopeptidase 1A \| chr2:18656059-18658906 FORWARD LENGTH=398	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009987	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0016485	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein processing	SoyBase	N/A	ISS
GO:0031365	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein amino acid modification	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004177	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity	SoyBase	N/A	ISS
GO:0008235	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2738	KOG	Putative methionine aminopeptidase	JGI		ISS
PTHR10804	Panther	PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P)	JGI		ISS
PTHR10804:SF13	Panther	gb def: aminopeptidase p [nostoc sp. pcc 7120]	JGI		ISS
PF00557	PFAM	Metallopeptidase family M24	JGI		ISS
PF01753	PFAM	MYND finger	JGI		ISS
UniRef100_I1J7T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methionine aminopeptidase n=2 Tax=Glycine max RepID=I1J7T4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1J7T4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Methionine aminopeptidase n=2 Tax=Glycine max RepID=I1J7T4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g33520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g33520 not represented in the dataset	Glyma01g33520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g33520

Paralog	Evidence	Comments
Glyma03g03350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g33520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g138300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g33520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g33520

Limit To All Plant Sequences

>Glyma01g33520.2   sequence type=transcript   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAGGCCCAAAAGGCAGACTTTTCCTTCACCAACACGAAGTTATAAAATGTCTCGTCTCACTTCCGCAGGTTGTTCCAAAGTTCTATTCCTTCGTCTGCAACCCTAGCTTTCCGTTGTTTGCAAATCTATGGCTGGTGAATCTGATAAACCCGAAAACACCCTCTCTTGTGCTAACTGTGGCAAACCTGCGAATCTTCAGTGTCCAAAATGTATGGAATTGAAGCTTCCTCGAGAAGGTGCTGCCTTCTGCTCTCAGGATTGTTTCAAGTCTTCATGGAGCTCGCACAAATCAGTGCATCTGAAGGCAAAACTATCCCCACCTGGCACACAAAATTCAGACTCACTTGATGAAGGTTGGTTATATTGTTTGAAGAGAGGGCAGGCTCGAACGCCAAAGCTTCCTCACTTTGATTGGACAGGACCACTGCAGCCATATCCCATTTCTAGTAAACGGATTGTCCCAGATCAAATTGATAAACCTGATTGGGCTGGTGATGGAACACCCAAAATTGAGCCCAATAGTAGTCTACAGCATACCATTGAGGTCAAAACTCCAGATCAAATAGAGAGAATGAGGGAAACTTGTCGGATTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACGACTGATGAGATTGACAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATATCCATCGCCTCTCAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGTCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTGTACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTCTCCAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGATACGATTCCGTGAGATTGGTGAAGTCATTAATCGTCATGCTTCAATGTCTGGATTCTCGGTGGTAAAATCTTATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATTCAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGACAGACCTTTACAATTGAACCAATGATCAATGCCGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCGGATGGTAAACGAAGTGCTCAATTTGAGCACACTCTTTTGGTTTAAACCTATAATCTCATGCATGCTTTCCAAATCTCTCACTACTTTTATTACATAGTGATCTAAAGGTGTAAGCTATGGTGACAGAGACTGGTGTTGAAGTTTTAACAGGGCGGTTGCAGACATCACCCAATGTTTTTCCTTGGCTAGGTTCATAATTGGGTGAATCATGGAGACAGATGCTGGCAGTGTCTAAATACCATACAATTATTAGACGACATTTCATTGATCTATTTCTCTGATTGCCTCCTTTGGGTATCATGTTTGTAAGTTATACAAAAAACAGAAGCAAATTCAATTGAGTTTAGGTGAAAAGTATGCTTAATGATATGTTTGTGTAATTGAAGAAAATTTAATTTTAGAATTTTGTCTTGCTTTCCAATGCTTATGTTGGTTAATTCAATAATGTAAGTGCGAAGTTTTGAACACTAAGGCTTGGTTAATTTAATAATGTAAGAGCGAAGTTTTGAACACTAAGGCTTAATTATAACATTGACTTAATTATTAATT

>Glyma01g33520.3   sequence type=transcript   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAGGCCCAAAAGGCAGACTTTTCCTTCACCAACACGAAGTTATAAAATGTCTCGTCTCACTTCCGCAGGTTGTTCCAAAGTTCTATTCCTTCGTCTGCAACCCTAGCTTTCCGTTGTTTGCAAATCTATGGCTGGTGAATCTGATAAACCCGAAAACACCCTCTCTTGTGCTAACTGTGGCAAACCTGCGAATCTTCAGTGTCCAAAATGTATGGAATTGAAGCTTCCTCGAGAAGGTGCTGCCTTCTGCTCTCAGGATTGTTTCAAGTCTTCATGGAGCTCGCACAAATCAGTGCATCTGAAGGCAAAACTATCCCCACCTGGCACACAAAATTCAGACTCACTTGATGAAGGTTGGTTATATTGTTTGAAGAGAGGGCAGGCTCGAACGCCAAAGCTTCCTCACTTTGATTGGACAGGACCACTGCAGCCATATCCCATTTCTAGTAAACGGATTGTCCCAGATCAAATTGATAAACCTGATTGGGCTGGTGATGGAACACCCAAAATTGAGCCCAATAGTAGTCTACAGCATACCATTGAGGTCAAAACTCCAGATCAAATAGAGAGAATGAGGGAAACTTGTCGGATTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACGACTGATGAGATTGACAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATATCCATCGCCTCTCAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGTCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTGTACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTCTCCAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGATACGATTCCGTGAGATTGGTGAAGTCATTAATCGTCATGCTTCAATGTCTGGATTCTCGGTGGTAAAATCTTATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATTCAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGACAGACCTTTACAATTGAACCAATGATCAATGCCGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCGGATGGTAAACGAAGTGCTCAATTTGAGCACACTCTTTTGAGACTGGTGTTGAAGTTTTAACAGGGCGGTTGCAGACATCACCCAATGTTTTTCCTTGGCTAGGTTCATAATTGGGTGAATCATGGAGACAGATGCTGGCAGTGTCTAAATACCATACAATTATTAGACGACATTTCATTGATCTATTTCTCTGATTGCCTCCTTTGGGTATCATGTTTGTAAGTTATACAAAAAACAGAAGCAAATTCAATTGAGTTTAGGTGAAAAGTATGCTTAATGATATGTTTGTGTAATTGAAGAAAATTTAATTTTAGAATTTTGTCTTGCTTTCCAATGCTTATGTTGGTTAATTCAATAATGTAAGTGCGAAGTTTTGAACACTAAGGCTTGGTTAATTTAATAATGTAAGAGCGAAGTTTTGAACACTAAGGCTTAATTATAACATTGACTTAATTATTAATT

Coding sequences of Glyma01g33520

Limit To All Plant Sequences

>Glyma01g33520.1   sequence type=CDS   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGAATCTGATAAACCCGAAAACACCCTCTCTTGTGCTAACTGTGGCAAACCTGCGAATCTTCAGTGTCCAAAATGTATGGAATTGAAGCTTCCTCGAGAAGGTGCTGCCTTCTGCTCTCAGGATTGTTTCAAGTCTTCATGGAGCTCGCACAAATCAGTGCATCTGAAGGCAAAACTATCCCCACCTGGCACACAAAATTCAGACTCACTTGATGAAGGTTGGTTATATTGTTTGAAGAGAGGGCAGGCTCGAACGCCAAAGCTTCCTCACTTTGATTGGACAGGACCACTGCAGCCATATCCCATTTCTAGTAAACGGATTGTCCCAGATCAAATTGATAAACCTGATTGGGCTGGTGATGGAACACCCAAAATTGAGCCCAATAGTAGTCTACAGCATACCATTGAGGTCAAAACTCCAGATCAAATAGAGAGAATGAGGGAAACTTGTCGGATTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACGACTGATGAGATTGACAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATATCCATCGCCTCTCAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGTCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTGTACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTCTCCAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGATACGATTCCGTGAGATTGGTGAAGTCATTAATCGTCATGCTTCAATGTCTGGATTCTCGGTGGTAAAATCTTATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATTCAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGACAGACCTTTACAATTGAACCAATGATCAATGCCGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCGGATGGTAAACGAAGTGCTCAATTTGAGCACACTCTTTTGGTGACAGAGACTGGTGTTGAAGTTTTAACAGGGCGGTTGCAGACATCACCCAATGTTTTTCCTTGGCTAGGTTCATAA

>Glyma01g33520.2   sequence type=CDS   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGAATCTGATAAACCCGAAAACACCCTCTCTTGTGCTAACTGTGGCAAACCTGCGAATCTTCAGTGTCCAAAATGTATGGAATTGAAGCTTCCTCGAGAAGGTGCTGCCTTCTGCTCTCAGGATTGTTTCAAGTCTTCATGGAGCTCGCACAAATCAGTGCATCTGAAGGCAAAACTATCCCCACCTGGCACACAAAATTCAGACTCACTTGATGAAGGTTGGTTATATTGTTTGAAGAGAGGGCAGGCTCGAACGCCAAAGCTTCCTCACTTTGATTGGACAGGACCACTGCAGCCATATCCCATTTCTAGTAAACGGATTGTCCCAGATCAAATTGATAAACCTGATTGGGCTGGTGATGGAACACCCAAAATTGAGCCCAATAGTAGTCTACAGCATACCATTGAGGTCAAAACTCCAGATCAAATAGAGAGAATGAGGGAAACTTGTCGGATTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACGACTGATGAGATTGACAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATATCCATCGCCTCTCAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGTCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTGTACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTCTCCAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGATACGATTCCGTGAGATTGGTGAAGTCATTAATCGTCATGCTTCAATGTCTGGATTCTCGGTGGTAAAATCTTATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATTCAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGACAGACCTTTACAATTGAACCAATGATCAATGCCGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCGGATGGTAAACGAAGTGCTCAATTTGAGCACACTCTTTTGGTTTAA

>Glyma01g33520.3   sequence type=CDS   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGAATCTGATAAACCCGAAAACACCCTCTCTTGTGCTAACTGTGGCAAACCTGCGAATCTTCAGTGTCCAAAATGTATGGAATTGAAGCTTCCTCGAGAAGGTGCTGCCTTCTGCTCTCAGGATTGTTTCAAGTCTTCATGGAGCTCGCACAAATCAGTGCATCTGAAGGCAAAACTATCCCCACCTGGCACACAAAATTCAGACTCACTTGATGAAGGTTGGTTATATTGTTTGAAGAGAGGGCAGGCTCGAACGCCAAAGCTTCCTCACTTTGATTGGACAGGACCACTGCAGCCATATCCCATTTCTAGTAAACGGATTGTCCCAGATCAAATTGATAAACCTGATTGGGCTGGTGATGGAACACCCAAAATTGAGCCCAATAGTAGTCTACAGCATACCATTGAGGTCAAAACTCCAGATCAAATAGAGAGAATGAGGGAAACTTGTCGGATTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACGACTGATGAGATTGACAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATATCCATCGCCTCTCAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGTCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTGTACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTCTCCAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGATACGATTCCGTGAGATTGGTGAAGTCATTAATCGTCATGCTTCAATGTCTGGATTCTCGGTGGTAAAATCTTATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATTCAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGACAGACCTTTACAATTGAACCAATGATCAATGCCGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCGGATGGTAAACGAAGTGCTCAATTTGAGCACACTCTTTTGAGACTGGTGTTGAAGTTTTAA

Predicted protein sequences of Glyma01g33520

Limit To All Plant Sequences

>Glyma01g33520.1   sequence type=predicted peptide   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGESDKPENTLSCANCGKPANLQCPKCMELKLPREGAAFCSQDCFKSSWSSHKSVHLKAKLSPPGTQNSDSLDEGWLYCLKRGQARTPKLPHFDWTGPLQPYPISSKRIVPDQIDKPDWAGDGTPKIEPNSSLQHTIEVKTPDQIERMRETCRIAREVLDAAARIIQPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGVHGDLNETYFVGNVDEESLQLVKCTYECLEKAISIVKPGIRFREIGEVINRHASMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTGRLQTSPNVFPWLGS*

>Glyma01g33520.2   sequence type=predicted peptide   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGESDKPENTLSCANCGKPANLQCPKCMELKLPREGAAFCSQDCFKSSWSSHKSVHLKAKLSPPGTQNSDSLDEGWLYCLKRGQARTPKLPHFDWTGPLQPYPISSKRIVPDQIDKPDWAGDGTPKIEPNSSLQHTIEVKTPDQIERMRETCRIAREVLDAAARIIQPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGVHGDLNETYFVGNVDEESLQLVKCTYECLEKAISIVKPGIRFREIGEVINRHASMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLV*

>Glyma01g33520.3   sequence type=predicted peptide   gene model=Glyma01g33520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGESDKPENTLSCANCGKPANLQCPKCMELKLPREGAAFCSQDCFKSSWSSHKSVHLKAKLSPPGTQNSDSLDEGWLYCLKRGQARTPKLPHFDWTGPLQPYPISSKRIVPDQIDKPDWAGDGTPKIEPNSSLQHTIEVKTPDQIERMRETCRIAREVLDAAARIIQPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGVHGDLNETYFVGNVDEESLQLVKCTYECLEKAISIVKPGIRFREIGEVINRHASMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLRLVLKF*

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