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Report for Sequence Feature Glyma01g33380

Feature Type:gene_model
Chromosome:Gm01
Start:45433047
stop:45455133
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g33380
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45200AT Annotation by Michelle Graham. TAIR10: golgi snare 12 | chr2:18637689-18639640 REVERSE LENGTH=239 SoyBaseE_val: 5.00E-153ISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000149GO-mf Annotation by Michelle Graham. GO Molecular Function: SNARE binding SoyBaseN/AISS
KOG3208 KOG SNARE protein GS28 JGI ISS
PTHR21094Panther GOS-28 SNARE- RELATED JGI ISS
PF12352PFAM Snare region anchored in the vesicle membrane C-terminus JGI ISS
UniRef100_I1J7S6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Golgi SNAP receptor complex member 1 n=1 Tax=Glycine max RepID=I1J7S6_SOYBN SoyBaseE_val: 1.00E-175ISS
UniRef100_I1J7S6UniRef Annotation by Michelle Graham. Best UniRef hit: Golgi SNAP receptor complex member 1 n=1 Tax=Glycine max RepID=I1J7S6_SOYBN SoyBaseE_val: 1.00E-175ISS

Expression Patterns of Glyma01g33380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g33380
ParalogEvidenceComments
Glyma03g03490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g33380 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g137300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g33380
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma01g33380
>Glyma01g33380.2   sequence type=transcript   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCATTCGCGAGAGTCGCGACAAAAGTTACAATAGACTCGGTTGCAGTTCTTCCTAAGGTGCACCCAGCTGCACACGATCCTCCCTCCTTCGCTCTCTACTTCGTTCGTCCTTCTCCACCCTCTCCTCTTCTCTGTTTCTGCTCTGTTCCACTCGCGACTCAGAGATCAACCACAGCTCGCTTAACCGACTATCCGAACTCTTCGTTGTAACCGAAATCCGGTGCACCTATAAAGATCCGAATGAGGGATCCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGCGCAAGGAAGCGCGCAAGATCGAGGGCGATCTCGACGTCAAGCTCTCCTCCTACGCTAAACTCGGCGCTCGCTTCACCCAAGGAGGTTCAGGTTATGTGGACAGTGGTTCACCACCTATTGGGTCCAGTAGGTCTTGGAAGTCCATGGAAATGGAAATCCAGTCTTTGCTCGAGAAACTGTTGGACATAAATGATTCAATGAGTAGATGTGCTGCATCTGCTGGACCGGCTACTTCTGTAACTCAAAAGTTGGCTAGGCACAGAGACATTCTTCATGAGTTTACCCAGGAATTTAGACGTATCAAGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTTTGAGTTCTGTCAGGGATGATATTACTGACTTTAAGACATCAGGCAGTATGTCACCAAGGATGCAGTTACTACGTGAGAGAGCTGCCATCCATGGAAGTATATCTCATATAGATGATGTGATTAGTCAAGCTCAAGCAACAAGAGCTGTGTTGGGTTCTCAGAGAACATTGTTTACTGATGTTCAAGGAAAAGTGAAGGTTCTTGGTGACAAGTTCCCCATGATTCGTAGCCTGCTTGGTTCAATAAGAAGGCGGCGCTCAAGGGATACTCTTATTCTGTCAGCAGTAATTGCTGCTTGTACGTTGTTTCTCATCATTTATTGGCTCTCAAAGTAACTATTTTGTAACACAAATTATGAATTATGGTACTTCTGTTCATTGAATTTTTCTGCTTCTGTTATTTTTTTCCTTTTGTTTTTTAGAGAGGGGGAAGAGTAGGATTTTTTTTTTTCAATCCACTGTAGAAGCTTCATATTTGTATGTCAGTTGGCATTAAGAAATTTATTTGACTAAGATTTTGATATAAATCATTATCGAATAGCAAAATTTCACATTGGTTCTGGTCTTTTGTGAAGTAGATTCTTCTAGTTTCTGAAATTT

>Glyma01g33380.3   sequence type=transcript   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCATTCGCGAGAGTCGCGACAAAAGTTACAATAGACTCGGTTGCAGTTCTTCCTAAGGTGCACCCAGCTGCACACGATCCTCCCTCCTTCGCTCTCTACTTCGTTCGTCCTTCTCCACCCTCTCCTCTTCTCTGTTTCTGCTCTGTTCCACTCGCGACTCAGAGATCAACCACAGCTCGCTTAACCGACTATCCGAACTCTTCGTTGTAACCGAAATCCGGTGCACCTATAAAGATCCGAATGAGGGATCCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGCGCAAGGAAGCGCGCAAGATCGAGGGCGATCTCGACGTCAAGCTCTCCTCCTACGCTAAACTCGGCGCTCGCTTCACCCAAGGAGGTTCAGGTTCAGGTTATGTGGACAGTGGTTCACCACCTATTGGGTCCAGTAGGTCTTGGAAGTCCATGGAAATGGAAATCCAGTCTTTGCTCGAGAAACTGTTGGACATAAATGATTCAATGAGTAGATGTGCTGCATCTGCTGGACCGGCTACTTCTGTAACTCAAAAGTTGGCTAGGCACAGAGACATTCTTCATGAGTTTACCCAGGAATTTAGACGTATCAAGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTTTGAGTTCTGTCAGGGATGATATTACTGACTTTAAGACATCAGGCAGTATGTCACCAAGGATGCAGTTACTACGTGAGAGAGCTGCCATCCATGGAAGTATATCTCATTGGTGACTGCCAAATATGCATTGATCCCTTGAAAGTTGAATCAGAGGGGACAAACCAGGCTCTTTCCACATTAGTCAGCTCTGGGGTTTACACAAATTTTGAACTAATGCCATAAAGCCAGCTTTAGCTAAGATTTGTCATGTGGCGTCTTCAGTTTATTTTGTACAATTTTTTTCTGGCTACATATCATAAGGTGTCTTTTATGTCGCATCTAAAGTTTACACCATATCTGAATGTATACATTTTAACTGGAGATTTAGATATTCAGTAATCAGTATCCCAGTAGTACTCAAAGTATATTTCTTTTTCTTTTCGATAACCATATTGTTAGGAAGCAGGAATCAAACCAACAATGCACCACTGAGAACACGTACCTACGACCCAAACGCAGGAGCAACCCACCCAAGCACCTTGGGGATTATGTCTAACAGAATCTGTTAGAAATCGCTGAGTTGGCAGATCCTTATTCGTTGAGGAGAAATATGCTGTCTGCTGCTTGTCCCCAACCTTCCTGTCGTGCCATGCATTCTGTTATTTCATGTCCATGCTTTCTGTTACTCCATTTTCATGTTTTTTTATCATATCATCCTTGTATGATGCCTATATATAGTGCTTAGTATGTAATGAATGGCAGCAGTTTAATAAAATCAACTTCCTCTCCCTTTTGGAGGCCCCTAGTCCTCCAATTCTAGGGTTGTTTCGGAGCATAACATATTTGGTGCTTTCATTGAGTTGAGCCATGGCTGAGTCAACTCGCTTGAAATCTAACATGGAATGGATAGAGGAAGCCATTGCAAAGCTTACCTCTAATCAACTCAACATCACAGCTACTTAGACTCACATGACGACGAAGCTTGATGGGCTCCTCCAGAAAATGGCCATTTTGGAAACCAATCAACACTCACCTTCGTCTTCCTCCGCTAATCCTCATTCTCCACCTCCTTCCTCACATCCTCACCGTATGAAGTTGGATGTGCTGCGATTTGATGGGACAGATCCCTCCAGTTGGATCTTTAAGATAACACAGTTTTTTGACTATCATTCCACCCTGGACTAAAATCGATTGACCATAGCCTCCTTCTATATGGAGAGACTGACTTTGGCTTGGTTCCAATGGATGACTCGAGATGGCCTGATTTCGTCGTGGCCAGGCCTTCTCCAGGCTCTAGAGGTCCGATTTGTTCCTTCTCAGTATGAGGATCCCATCGGAACTTTGTTTAAATTGACACGAGATAGATGATGTGATTAGTCAAGCTCAAGCAACAAGAGCTGTGTTGGGTTCTCAGAGAACATTGTTTACTGATGTTCAAGGAAAAGTGAAGGTTCTTGGTGACAAGTTCCCCATGATTCGTAGCCTGCTTGGTTCAATAAGAAGGCGGCGCTCAAGGGATACTCTTATTCTGTCAGCAGTAATTGCTGCTTGTACGTTGTTTCTCATCATTTATTGGCTCTCAAAGTAACTATTTTGTAACACAAATTATGAATTATGGTACTTCTGTTCATTGAATTTTTCTGCTTCTGTTATTTTTTTCCTTTTGTTTTTTAGAGAGGGGGAAGAGTAGGATTTTTTTTTTTCAATCCACTGTAGAAGCTTCATATTTGTATGTCAGTTGGCATTAAGAAATTTATTTGACTAAGATTTTGATATAAATCATTATCGAATAGCAAAATTTCACATTGGTTCTGGTCTTTTGTGAAGTAGATTCTTCTAGTTTCTGAAATTT
Coding sequences of Glyma01g33380
>Glyma01g33380.1   sequence type=CDS   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGATCCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGCGCAAGGAAGCGCGCAAGATCGAGGGCGATCTCGACGTCAAGCTCTCCTCCTACGCTAAACTCGGCGCTCGCTTCACCCAAGGAGGTTCAGGTTCAGGTTATGTGGACAGTGGTTCACCACCTATTGGGTCCAGTAGGTCTTGGAAGTCCATGGAAATGGAAATCCAGTCTTTGCTCGAGAAACTGTTGGACATAAATGATTCAATGAGTAGATGTGCTGCATCTGCTGGACCGGCTACTTCTGTAACTCAAAAGTTGGCTAGGCACAGAGACATTCTTCATGAGTTTACCCAGGAATTTAGACGTATCAAGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTTTGAGTTCTGTCAGGGATGATATTACTGACTTTAAGACATCAGGCAGTATGTCACCAAGGATGCAGTTACTACGTGAGAGAGCTGCCATCCATGGAAGTATATCTCATATAGATGATGTGATTAGTCAAGCTCAAGCAACAAGAGCTGTGTTGGGTTCTCAGAGAACATTGTTTACTGATGTTCAAGGAAAAGTGAAGGTTCTTGGTGACAAGTTCCCCATGATTCGTAGCCTGCTTGGTTCAATAAGAAGGCGGCGCTCAAGGGATACTCTTATTCTGTCAGCAGTAATTGCTGCTTGTACGTTGTTTCTCATCATTTATTGGCTCTCAAAGTAA

>Glyma01g33380.2   sequence type=CDS   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGATCCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGCGCAAGGAAGCGCGCAAGATCGAGGGCGATCTCGACGTCAAGCTCTCCTCCTACGCTAAACTCGGCGCTCGCTTCACCCAAGGAGGTTCAGGTTATGTGGACAGTGGTTCACCACCTATTGGGTCCAGTAGGTCTTGGAAGTCCATGGAAATGGAAATCCAGTCTTTGCTCGAGAAACTGTTGGACATAAATGATTCAATGAGTAGATGTGCTGCATCTGCTGGACCGGCTACTTCTGTAACTCAAAAGTTGGCTAGGCACAGAGACATTCTTCATGAGTTTACCCAGGAATTTAGACGTATCAAGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTTTGAGTTCTGTCAGGGATGATATTACTGACTTTAAGACATCAGGCAGTATGTCACCAAGGATGCAGTTACTACGTGAGAGAGCTGCCATCCATGGAAGTATATCTCATATAGATGATGTGATTAGTCAAGCTCAAGCAACAAGAGCTGTGTTGGGTTCTCAGAGAACATTGTTTACTGATGTTCAAGGAAAAGTGAAGGTTCTTGGTGACAAGTTCCCCATGATTCGTAGCCTGCTTGGTTCAATAAGAAGGCGGCGCTCAAGGGATACTCTTATTCTGTCAGCAGTAATTGCTGCTTGTACGTTGTTTCTCATCATTTATTGGCTCTCAAAGTAA

>Glyma01g33380.3   sequence type=CDS   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGATCCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGCGCAAGGAAGCGCGCAAGATCGAGGGCGATCTCGACGTCAAGCTCTCCTCCTACGCTAAACTCGGCGCTCGCTTCACCCAAGGAGGTTCAGGTTCAGGTTATGTGGACAGTGGTTCACCACCTATTGGGTCCAGTAGGTCTTGGAAGTCCATGGAAATGGAAATCCAGTCTTTGCTCGAGAAACTGTTGGACATAAATGATTCAATGAGTAGATGTGCTGCATCTGCTGGACCGGCTACTTCTGTAACTCAAAAGTTGGCTAGGCACAGAGACATTCTTCATGAGTTTACCCAGGAATTTAGACGTATCAAGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTTTGAGTTCTGTCAGGGATGATATTACTGACTTTAAGACATCAGGCAGTATGTCACCAAGGATGCAGTTACTACGTGAGAGAGCTGCCATCCATGGAAGTATATCTCATTGGTGA
Predicted protein sequences of Glyma01g33380
>Glyma01g33380.1   sequence type=predicted peptide   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDPNLELQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGSGSGYVDSGSPPIGSSRSWKSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDITDFKTSGSMSPRMQLLRERAAIHGSISHIDDVISQAQATRAVLGSQRTLFTDVQGKVKVLGDKFPMIRSLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK*

>Glyma01g33380.2   sequence type=predicted peptide   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDPNLELQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGSGYVDSGSPPIGSSRSWKSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDITDFKTSGSMSPRMQLLRERAAIHGSISHIDDVISQAQATRAVLGSQRTLFTDVQGKVKVLGDKFPMIRSLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK*

>Glyma01g33380.3   sequence type=predicted peptide   gene model=Glyma01g33380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDPNLELQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGSGSGYVDSGSPPIGSSRSWKSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDITDFKTSGSMSPRMQLLRERAAIHGSISHW*






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