SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45130 | AT | Annotation by Michelle Graham. TAIR10: SPX domain gene 3 | chr2:18606489-18607754 FORWARD LENGTH=245 | SoyBase | E_val: 2.00E-102 | ISS |
| GO:0006817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate ion transport | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0080040 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1161 | KOG | Protein involved in vacuolar polyphosphate accumulation, contains SPX domain | JGI | ISS | |
| PTHR10783 | Panther | XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR | JGI | ISS | |
| PTHR10783:SF5 | Panther | XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR IDS-4 | JGI | ISS | |
| PF03105 | PFAM | SPX domain | JGI | ISS | |
| UniRef100_D7LBV7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SPX domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LBV7_ARALL | SoyBase | E_val: 3.00E-102 | ISS |
| UniRef100_UPI00023376D9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023376D9 related cluster n=1 Tax=unknown RepID=UPI00023376D9 | SoyBase | E_val: 0 | ISS |
|
Glyma01g33170 not represented in the dataset |
Glyma01g33170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g03820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g135500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g33170.2 sequence type=CDS gene model=Glyma01g33170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTTTGGGAAGAGACTCAAGCAACAAATTCAGGAATCGTTGCCGGAGTGGAGGGACAAGTATTTGTCGTACAAGGAATTGAAGAAACTTGTACGGCTCATATCGGCGGCGCCGCCTACCTTGTTGAATGGGTCGTTGGAATTTGGCAAGACGGAGGCTGAGTTTGTGTACTTGTTGAACAATGAAATAGACAAGTTCAATGGGTTCTTCATGGAGAAAGAGGAGGACTTCATTATTCGCCACATGGAAGTACAACAGAGAATCCAGAGAGTAGTTGATTTGTGGGGACCAAATGGAAGTCAACCTTCTGAAGAGGATTATAAAGAGGAGATGGCGAAAATCAGAAAAGCTATTGTTGATTTCCATGGTGAAATGGTTCTCTTAGTCAACTACAGCAACATCAATTACACAGGGTTGGCAAAAATTCTGAAGAAATACGACAAGAGGACAGGGGGGCTTCTGCGTTTGCCGTTCATCCAGAAAGTGTTGGAGCAGCCCTTTTTCACAACAGATTTGATTTCAAAGCTCGTGAAGGAGTGCGAGAGCATAATTGATGCAGTGTTCCCGGCCGAGGAAGAAGCTGAAAGAGCAAAGGAAGCAAAAGAGGCGATAACTGTGGCAGGAAAAGGGATTTTCAGAAACACGGTTGCAGCTTTGCTTACACTGCAAGAAATCAGAAAAGGTAGCTCCACAGAGAGCCCTTTTTCTCTGCCTCCACTCAATTTGCCGGACTCTGATCTCATCCAATCAATACAGCTCAATGCTGCAGTTCCTATTGTCTAG
>Glyma01g33170.2 sequence type=predicted peptide gene model=Glyma01g33170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKFGKRLKQQIQESLPEWRDKYLSYKELKKLVRLISAAPPTLLNGSLEFGKTEAEFVYLLNNEIDKFNGFFMEKEEDFIIRHMEVQQRIQRVVDLWGPNGSQPSEEDYKEEMAKIRKAIVDFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLEQPFFTTDLISKLVKECESIIDAVFPAEEEAERAKEAKEAITVAGKGIFRNTVAALLTLQEIRKGSSTESPFSLPPLNLPDSDLIQSIQLNAAVPIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
