SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66910 | AT | Annotation by Michelle Graham. TAIR10: Disease resistance protein (CC-NBS-LRR class) family | chr5:26718338-26721133 REVERSE LENGTH=815 | SoyBase | E_val: 5.00E-11 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| PF05659 | PFAM | Arabidopsis broad-spectrum mildew resistance protein RPW8 | JGI | ISS | |
| UniRef100_B9S8L2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein ADR1, putative n=1 Tax=Ricinus communis RepID=B9S8L2_RICCO | SoyBase | E_val: 2.00E-19 | ISS |
| UniRef100_E0CVW6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=E0CVW6_VITVI | SoyBase | E_val: 1.00E-22 | ISS |
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Glyma01g32825 not represented in the dataset |
Glyma01g32825 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g133100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g32825.1 sequence type=CDS gene model=Glyma01g32825 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGCAGCTTTGGGGGCTTTGTTTGGGGAATTGCTGAAAGCCATTTTGCTCGCAAAAGACAAAGCGATTATGTTCAAGGAAACCATGGACCACCTCGAATCCACTCTGAAATCAATAGAACCGGTGATAAGAAAGATAGAAAAGCACAACAAGAAGTTGGGGCGTCCGAAGGAGGAACTCGAATCGCTGAAAACAAAGATGGAAAATGGCGCGAAGCTTGTTTCCAAGTGTTCCGAAATCCACAAGCTAGATTTTGTGACCAAGATTCGTTACCAGAGTAAACTAGAGGCACTTGAAGACTCTCTCACGAAGTTTTTCGTCATTGACCTGGCAGCTCAGACGGCGAGAGATCAGAAGGAGACCTTGCGTAAGGTTAGAAGAATGGTAAACGCCGCTAAGAAGTTGCCCTTCAACTCAGTTGATGAATCTAACCCTAAGCCTGCAGGGGAGGTGATTGAATCTGAGATCGAAGCTGAATCAGATTATGATGATGCAGTGAGTGTCGATTCTGCACCCATCTGTGAGAATGAGTCAGATACTATTTCTCATTCTGATGAGCAACAAGTCAAAATTAATGAAGGCGTGGATTCAAGCGTCATACAAGCAGAAGAACCACCTTCAATGACGACTGTCATCGGGCCTCAATATTGTGCTGAATTTACCACCTTACTAGAGATTGTTAGAACGGTGAAGACTTTCGGCCCTGATACATTCAGTGTCGCAAACGTCAACGACGACATTGTGTTCAACCTTTAA
>Glyma01g32825.1 sequence type=predicted peptide gene model=Glyma01g32825 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDAALGALFGELLKAILLAKDKAIMFKETMDHLESTLKSIEPVIRKIEKHNKKLGRPKEELESLKTKMENGAKLVSKCSEIHKLDFVTKIRYQSKLEALEDSLTKFFVIDLAAQTARDQKETLRKVRRMVNAAKKLPFNSVDESNPKPAGEVIESEIEAESDYDDAVSVDSAPICENESDTISHSDEQQVKINEGVDSSVIQAEEPPSMTTVIGPQYCAEFTTLLEIVRTVKTFGPDTFSVANVNDDIVFNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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