Glyma01g32390 - SoyBase

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Report for Sequence Feature Glyma01g32390

Feature Type:	gene_model
Chromosome:	Gm01
Start:	43912453
stop:	43917776
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g32390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51730	AT	Annotation by Michelle Graham. TAIR10: saposin B domain-containing protein \| chr3:19186970-19188436 FORWARD LENGTH=213	SoyBase	E_val: 2.00E-57	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1340	KOG	Prosaposin	JGI		ISS
PTHR11480	Panther	SAPOSIN-RELATED	JGI		ISS
PTHR11480:SF2	Panther	ECDYSONE DEPENDENT GLYCOPROTEIN	JGI		ISS
PF03489	PFAM	Saposin-like type B, region 2	JGI		ISS
PF05184	PFAM	Saposin-like type B, region 1	JGI		ISS
UniRef100_G7KX29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Saposin B domain-containing protein n=2 Tax=Medicago truncatula RepID=G7KX29_MEDTR	SoyBase	E_val: 1.00E-75	ISS
UniRef100_I1J7N2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7N2_SOYBN	SoyBase	E_val: 1.00E-154	ISS

Expression Patterns of Glyma01g32390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g32390 not represented in the dataset	Glyma01g32390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g32390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g131400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g32390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g32390

Limit To All Plant Sequences

>Glyma01g32390.5   sequence type=transcript   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTTAATATTTTTCGTGTTTGTTATTTGTTCTGTATTTAATATGAACATAATATATGCCCTCTTTGTTTTTCTGATCATGCAATTGCCCTGATTTATTTTTTGTTCTTATCCTGATTGGTTCAACATCATTATTATGTCACGCACGTTATCATGGTGTGTTGCACTAATTGATGATAATATTTAATTGTAAAGTTATTTTTATCATATTAGCATTGTTTAAAGTATATTTTGATGTTGCATGTATTCGTTTTCGTCCAAGATTAATTCGTTCTACATATCTTTGATGTATCCCTTAAATTTTATTGGCTTCTGCTTTTATTTTTTTTCTGATGGAAGTTAATTAACATTGGTTTTTGATGTGCTTGTTAATTAATTACAGGCACCATGGAGGAAAGAGTGGGGATTTTGTTACTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATACAAGAGAGCTAGCAATAATCTCTGAATTAAACAGAAAATCAGATGTCTGTGAACTTTGTGAGGAGTATACTGCTGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAGAGATTATCGATTCCCTTCACAATATTTGCAATCATATTCTCTCTTTCAAACAGCAGTGCATCGAATTGGTGGATCATTATGCCCCACGTTTCTTCTTAGAAATTGCATCAGTTCAGCCTGGAGAACTCTGCAAACAGATCCACATCTGTCAATCTGCAAAGATTTCTTCAGAAGTTGAAGGAAATAGCTGTGACTCTTGCAAAGATACTGTTTCAGCCTTACTGGTTAAGTTGAATGATCCTGATACCAAGCTTGAAATAATGGAGGCACTGTTGAAGGCATGCAATTCTATGGACAAGTTTTCCAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTTTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAGCAGATATATGCACTACATTACATGCCTGCCCTGCTTCCACTGCAGTTAGCAACAAGGAAGCCTCAATCATGGAAGTGCCTTTGATTTCTGACTCTTAATCATGGGAGAAGAGTTCTATTAGATTTATGGAGCACTTATTGCTTTAGTTCTATTCCTAATGTATTTATCTACATTAAAATCCATGTGCTTGTAACCATGTGCTCCTGGTATACTACAACTACTCTCACTGAATGTCGAAGTGAAGTATATGATTTTGAGATGCCACAATTTTACATGTATTTCTTCATTTTGAATAATGCATGGCAGGCAGGCACTAAGTCAAGATGGAATGCAAGACACACTTTCGCCTTATTCCAATTAATACATTTACTGTAACTGGTTGATCCCTTCACATCTATAATATAAAAAACCTATTTAATT

>Glyma01g32390.6   sequence type=transcript   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTTAATATTTTTCGTGTTTGTTATTTGTTCTGTATTTAATATGAACATAATATATGCCCTCTTTGTTTTTCTGATCATGCAATTGCCCTGATTTATTTTTTGTTCTTATCCTGATTGGTTCAACATCATTATTATGTCACGCACGTTATCATGGTGTGTTGCACTAATTGATGATAATATTTAATTGTAAAGTTATTTTTATCATATTAGCATTGTTTAAAGTATATTTTGATGTTGCATGTATTCGTTTTCGTCCAAGATTAATTCGTTCTACATATCTTTGATGCACCATGGAGGAAAGAGTGGGGATTTTGTTACTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATACAAGAGAGCTAGCAATAATCTCTGAATTAAACAGAAAATCAGATGTCTGTGAACTTTGTGAGGAGTATACTGCTGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAGAGATTATCGATTCCCTTCACAATATTTGCAATCATATTCTCTCTTTCAAACAGCAGTGCATCGAATTGGTGGATCATTATGCCCCACGTTTCTTCTTAGAAATTGCATCAGTTCAGCCTGGAGAACTCTGCAAACAGATCCACATCTGTCAATCTGCAAAGATTTCTTCAGAAGTTGAAGGAAATAGCTGTGACTCTTGCAAAGATACTGTTTCAGCCTTACTGGTTAAGTTGAATGATCCTGATACCAAGCTTGAAATAATGGAGGCACTGTTGAAGGCATGCAATTCTATGGACAAGTTTTCCAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTTTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAGCAGATATATGCACTACATTACATGCCTGCCCTGCTTCCACTGCAGTTAGCAACAAGGAAGCCTCAATCATGGAAGTGCCTTTGATTTCTGACTCTTAATCATGGGAGAAGAGTTCTATTAGATTTATGGAGCACTTATTGCTTTAGTTCTATTCCTAATGTATTTATCTACATTAAAATCCATGTGCTTGTAACCATGTGCTCCTGGTATACTACAACTACTCTCACTGAATGTCGAAGTGAAGTATATGATTTTGAGATGCCACAATTTTACATGTATTTCTTCATTTTGAATAATGCATGGCAGGCAGGCACTAAGTCAAGATGGAATGCAAGACACACTTTCGCCTTATTCCAATTAATACATTTACTGTAACTGGTTGATCCCTTCACATCTATAATATAAAAAACCTATTTAATT

>Glyma01g32390.7   sequence type=transcript   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTTAATATTTTTCGTGTTTGTTATTTGTTCTGTATTTAATATGAACATAATATATGCCCTCTTTGTTTTTCTGATCATGCAATTGCCCTGATTTATTTTTTGTTCTTATCCTGATTGGTTCAACATCATTATTATGTCACGCACGTTATCATGGCACCATGGAGGAAAGAGTGGGGATTTTGTTACTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATACAAGAGAGCTAGCAATAATCTCTGAATTAAACAGAAAATCAGATGTCTGTGAACTTTGTGAGGAGTATACTGCTGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAGAGATTATCGATTCCCTTCACAATATTTGCAATCATATTCTCTCTTTCAAACAGCAGTGCATCGAATTGGTGGATCATTATGCCCCACGTTTCTTCTTAGAAATTGCATCAGTTCAGCCTGGAGAACTCTGCAAACAGATCCACATCTGTCAATCTGCAAAGATTTCTTCAGAAGTTGAAGGAAATAGCTGTGACTCTTGCAAAGATACTGTTTCAGCCTTACTGGTTAAGTTGAATGATCCTGATACCAAGCTTGAAATAATGGAGGCACTGTTGAAGGCATGCAATTCTATGGACAAGTTTTCCAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTTTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAGCAGATATATGCACTACATTACATGCCTGCCCTGCTTCCACTGCAGTTAGCAACAAGGAAGCCTCAATCATGGAAGTGCCTTTGATTTCTGACTCTTAATCATGGGAGAAGAGTTCTATTAGATTTATGGAGCACTTATTGCTTTAGTTCTATTCCTAATGTATTTATCTACATTAAAATCCATGTGCTTGTAACCATGTGCTCCTGGTATACTACAACTACTCTCACTGAATGTCGAAGTGAAGTATATGATTTTGAGATGCCACAATTTTACATGTATTTCTTCATTTTGAATAATGCATGGCAGGCAGGCACTAAGTCAAGATGGAATGCAAGACACACTTTCGCCTTATTCCAATTAATACATTTACTGTAACTGGTTGATCCCTTCACATCTATAATATAAAAAACCTATTTAATT

Coding sequences of Glyma01g32390

Limit To All Plant Sequences

>Glyma01g32390.4   sequence type=CDS   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGAGTGGGGATTTTGTTACTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATACAAGAGAGCTAGCAATAATCTCTGAATTAAACAGAAAATCAGATGTCTGTGAACTTTGTGAGGAGTATACTGCTGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAGAGATTATCGATTCCCTTCACAATATTTGCAATCATATTCTCTCTTTCAAACAGCAGTGCATCGAATTGGTGGATCATTATGCCCCACGTTTCTTCTTAGAAATTGCATCAGTTCAGCCTGGAGAACTCTGCAAACAGATCCACATCTGTCAATCTGCAAAGATTTCTTCAGAAGTTGAAGGAAATAGCTGTGACTCTTGCAAAGATACTGTTTCAGCCTTACTGGTTAAGTTGAATGATCCTGATACCAAGCTTGAAATAATGGAGGCACTGTTGAAGGCATGCAATTCTATGGACAAGTTTTCCAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTTTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAGCAGATATATGCACTACATTACATGCCTGCCCTGCTTCCACTGCAGTTAGCAACAAGGAAGCCTCAATCATGGAAGTGCCTTTGATTTCTGACTCTTAA

>Glyma01g32390.5   sequence type=CDS   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGAGTGGGGATTTTGTTACTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATACAAGAGAGCTAGCAATAATCTCTGAATTAAACAGAAAATCAGATGTCTGTGAACTTTGTGAGGAGTATACTGCTGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAGAGATTATCGATTCCCTTCACAATATTTGCAATCATATTCTCTCTTTCAAACAGCAGTGCATCGAATTGGTGGATCATTATGCCCCACGTTTCTTCTTAGAAATTGCATCAGTTCAGCCTGGAGAACTCTGCAAACAGATCCACATCTGTCAATCTGCAAAGATTTCTTCAGAAGTTGAAGGAAATAGCTGTGACTCTTGCAAAGATACTGTTTCAGCCTTACTGGTTAAGTTGAATGATCCTGATACCAAGCTTGAAATAATGGAGGCACTGTTGAAGGCATGCAATTCTATGGACAAGTTTTCCAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTTTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAGCAGATATATGCACTACATTACATGCCTGCCCTGCTTCCACTGCAGTTAGCAACAAGGAAGCCTCAATCATGGAAGTGCCTTTGATTTCTGACTCTTAA

>Glyma01g32390.6   sequence type=CDS   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGAGTGGGGATTTTGTTACTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATACAAGAGAGCTAGCAATAATCTCTGAATTAAACAGAAAATCAGATGTCTGTGAACTTTGTGAGGAGTATACTGCTGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAGAGATTATCGATTCCCTTCACAATATTTGCAATCATATTCTCTCTTTCAAACAGCAGTGCATCGAATTGGTGGATCATTATGCCCCACGTTTCTTCTTAGAAATTGCATCAGTTCAGCCTGGAGAACTCTGCAAACAGATCCACATCTGTCAATCTGCAAAGATTTCTTCAGAAGTTGAAGGAAATAGCTGTGACTCTTGCAAAGATACTGTTTCAGCCTTACTGGTTAAGTTGAATGATCCTGATACCAAGCTTGAAATAATGGAGGCACTGTTGAAGGCATGCAATTCTATGGACAAGTTTTCCAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTTTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAGCAGATATATGCACTACATTACATGCCTGCCCTGCTTCCACTGCAGTTAGCAACAAGGAAGCCTCAATCATGGAAGTGCCTTTGATTTCTGACTCTTAA

>Glyma01g32390.7   sequence type=CDS   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGAGTGGGGATTTTGTTACTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATACAAGAGAGCTAGCAATAATCTCTGAATTAAACAGAAAATCAGATGTCTGTGAACTTTGTGAGGAGTATACTGCTGAGGCACTTGATTATCTAAATGATAAAGAGAACCAGAGAGAGATTATCGATTCCCTTCACAATATTTGCAATCATATTCTCTCTTTCAAACAGCAGTGCATCGAATTGGTGGATCATTATGCCCCACGTTTCTTCTTAGAAATTGCATCAGTTCAGCCTGGAGAACTCTGCAAACAGATCCACATCTGTCAATCTGCAAAGATTTCTTCAGAAGTTGAAGGAAATAGCTGTGACTCTTGCAAAGATACTGTTTCAGCCTTACTGGTTAAGTTGAATGATCCTGATACCAAGCTTGAAATAATGGAGGCACTGTTGAAGGCATGCAATTCTATGGACAAGTTTTCCAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCTTTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAGCAGATATATGCACTACATTACATGCCTGCCCTGCTTCCACTGCAGTTAGCAACAAGGAAGCCTCAATCATGGAAGTGCCTTTGATTTCTGACTCTTAA

Predicted protein sequences of Glyma01g32390

Limit To All Plant Sequences

>Glyma01g32390.4   sequence type=predicted peptide   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEERVGILLLILLGAAWACDTRELAIISELNRKSDVCELCEEYTAEALDYLNDKENQREIIDSLHNICNHILSFKQQCIELVDHYAPRFFLEIASVQPGELCKQIHICQSAKISSEVEGNSCDSCKDTVSALLVKLNDPDTKLEIMEALLKACNSMDKFSKKCKRMVFEYGPLILVKAEKFLKTADICTTLHACPASTAVSNKEASIMEVPLISDS*

>Glyma01g32390.5   sequence type=predicted peptide   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEERVGILLLILLGAAWACDTRELAIISELNRKSDVCELCEEYTAEALDYLNDKENQREIIDSLHNICNHILSFKQQCIELVDHYAPRFFLEIASVQPGELCKQIHICQSAKISSEVEGNSCDSCKDTVSALLVKLNDPDTKLEIMEALLKACNSMDKFSKKCKRMVFEYGPLILVKAEKFLKTADICTTLHACPASTAVSNKEASIMEVPLISDS*

>Glyma01g32390.6   sequence type=predicted peptide   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEERVGILLLILLGAAWACDTRELAIISELNRKSDVCELCEEYTAEALDYLNDKENQREIIDSLHNICNHILSFKQQCIELVDHYAPRFFLEIASVQPGELCKQIHICQSAKISSEVEGNSCDSCKDTVSALLVKLNDPDTKLEIMEALLKACNSMDKFSKKCKRMVFEYGPLILVKAEKFLKTADICTTLHACPASTAVSNKEASIMEVPLISDS*

>Glyma01g32390.7   sequence type=predicted peptide   gene model=Glyma01g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEERVGILLLILLGAAWACDTRELAIISELNRKSDVCELCEEYTAEALDYLNDKENQREIIDSLHNICNHILSFKQQCIELVDHYAPRFFLEIASVQPGELCKQIHICQSAKISSEVEGNSCDSCKDTVSALLVKLNDPDTKLEIMEALLKACNSMDKFSKKCKRMVFEYGPLILVKAEKFLKTADICTTLHACPASTAVSNKEASIMEVPLISDS*

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