SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40435 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16887048-16888407 FORWARD LENGTH=158 | SoyBase | E_val: 1.00E-48 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| UniRef100_B9S4A6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S4A6_RICCO | SoyBase | E_val: 6.00E-55 | ISS |
| UniRef100_C6T227 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T227_SOYBN | SoyBase | E_val: 6.00E-103 | ISS |
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Glyma01g32130 not represented in the dataset |
Glyma01g32130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g04970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g129700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g32130.2 sequence type=transcript gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAATATTATTTACACCCACCCTTCCTATATATATATAAAAAAGAAACCCCCTAAGCCTCAGATGGGAAAGGAAAACCATCGAGAAACCAAAAACCAAAATCAATTTAGAGGAAAAAGTTGGAAGAAGCATGGATTCTAGGCGGCGTGGTAAAAACGCATCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCAGAGCTAGGAACCGCGGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGTCCCGGTATGCTTGGGGCAATACTCGATGCATTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAGTAAGAGAATACACTAGGATATACAATGTCTAATCCCTTCTTATCTTAGTATATATTTGTCCTTCTTTTGTTTTTCCTTTGGAATAATTTTAAGCGTCTAAAATCAGGTCACAATTATTGGCTTAGATACATGATTTCTGAAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATAATCTACTTTACATTTTTTTGTTTCTTTAATATATATTATATAGTATTCTTCTTTTAA >Glyma01g32130.3 sequence type=transcript gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAATATTATTTACACCCACCCTTCCTATATATATATAAAAAAGAAACCCCCTAAGCCTCAGATGGGAAAGGAAAACCATCGAGAAACCAAAAACCAAAATCAATTTAGAGGAAAAAGTTGGAAGAAGCATGGATTCTAGGCGGCGTGGTAAAAACGCATCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTAATTCACTCTACACACTGATTATAATATATATGATGCATATTAACTTCGGTTTTCAATGCTTCTTTAGCACAAATCAAGAGTTTCATTATTTTTTAACTGTTTTTTTTTTGTTAATTTGGCAGGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCAGAGCTAGGAACCGCGGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGTCCCGGTATGCTTGGGGCAATACTCGATGCATTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAGTAAGAGAATACACTAGGATATACAATGTCTAATCCCTTCTTATCTTAGTATATATTTGTCCTTCTTTTGTTTTTCCTTTGGAATAATTTTAAGCGTCTAAAATCAGGTCACAATTATTGGCTTAGATACATGATTTCTGAAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATAATCTACTTTACATTTTTTTGTTTCTTTAATATATATTATATAGTATTCTTCTTTTAA
>Glyma01g32130.1 sequence type=CDS gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTAGGCGGCGTGGTAAAAACGCATCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCAGAGCTAGGAACCGCGGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGTCCCGGTATGCTTGGGGCAATACTCGATGCATTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAAGTCAAGAGAACGAAAGCATTGACGCGCAAGTGGTAAAGCAAGCAGTGCTTCAAGCAATCCAAAACATGGATTAA >Glyma01g32130.2 sequence type=CDS gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTAGGCGGCGTGGTAAAAACGCATCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCAGAGCTAGGAACCGCGGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGTCCCGGTATGCTTGGGGCAATACTCGATGCATTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAGTAAGAGAATACACTAGGATATACAATGTCTAA >Glyma01g32130.3 sequence type=CDS gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCATATTAACTTCGGTTTTCAATGCTTCTTTAGCACAAATCAAGAGTTTCATTATTTTTTAACTGTTTTTTTTTTGTTAATTTGGCAGGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCAGAGCTAGGAACCGCGGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGTCCCGGTATGCTTGGGGCAATACTCGATGCATTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACTTTCCAGCTTGAAGCAGTCGGAGGAGAAGTAAGAGAATACACTAGGATATACAATGTCTAA
>Glyma01g32130.1 sequence type=predicted peptide gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSRRRGKNASMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLGAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAIQNMD* >Glyma01g32130.2 sequence type=predicted peptide gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSRRRGKNASMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLGAILDAFEELGLDVLDARVSCEDTFQLEAVGGEVREYTRIYNV* >Glyma01g32130.3 sequence type=predicted peptide gene model=Glyma01g32130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMHINFGFQCFFSTNQEFHYFLTVFFLLIWQVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLGAILDAFEELGLDVLDARVSCEDTFQLEAVGGEVREYTRIYNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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