SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G14160 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate-dependent dioxygenase family protein | chr3:4693495-4695198 FORWARD LENGTH=455 | SoyBase | E_val: 3.00E-100 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016706 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | SoyBase | N/A | ISS |
| PTHR16557 | Panther | ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_G7JJJ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-ketoglutarate-dependent dioxygenase alkB-like protein n=1 Tax=Medicago truncatula RepID=G7JJJ5_MEDTR | SoyBase | E_val: 4.00E-136 | ISS |
| UniRef100_G7JJJ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Alpha-ketoglutarate-dependent dioxygenase alkB-like protein n=1 Tax=Medicago truncatula RepID=G7JJJ5_MEDTR | SoyBase | E_val: 4.00E-136 | ISS |
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Glyma01g32116 not represented in the dataset |
Glyma01g32116 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g129600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g32116.1 sequence type=CDS gene model=Glyma01g32116 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTGCTTCTCGCACTCTACCTCTTAGTACGTGGTTGTTTCATCCTCCATTCACATCGTTTCGCCGCCATACTTTCCTCCAATCTCAAATCTCTTCTAAGTTTACCGTATCGAACAAAATGGGCAAAGTTGTCAATTCAAACACCGAGTCTTCACTTTCAGAATCATCGTCAGCGGTTGCAGATTGTGCTGTTCGCAAAGACAATGTTATGGTTGATGGGCCATTGGCAGATACACCTGATGACAACGAAGGATTTATAATGTTTGGCAGTATTCGTACATCGCTGAATAGAAAGAATGAGAAGAAGCATTCAGTACCTTGGTTCCCTGGTTGCACACCATTTGTTGATAAACACTCTGAATTCACGTCTAGTTCTAATCATTTAAAATCAACACCAACAACTACTACTACGAAATTTTCAAATTCTATGTTGACAACCTCCAATGATAAATCGCCTCAAGGTAGTAATTCCTGGAAGAACAAATCTGCATCTGTCAATAGAACTTATAATAGCGCCAGCAATTCAAACTTTGATAATGAATTGCCTCAAGGTAGTAATTTTTGGAAGAAGAAACCTGCATCTGTGAATAGGCCTTATAATAGCCCCAACAATTCAAACTATGATGCAGTTGGTAACAAGTTGGATGCTTCAGTTGGTTCGCCAATGTCCAAGCCATTTGACATCTGCTTTTCTGGAAGAAGAAATCCTGCTTTAATAGGAGCTACATTGCCGGGAGACAATGAAAAAAGCTGCATTGAAATGCAGGAGGAAAAGATAAAAGGGGGGATATTGAGGCCTGGAATGGTTCTCTTGAAAAATTATATAACTCTTGATGAACAGGTGGAAATAGTGAAAGTTTGTCGAGAACTTGGTCTTGGTCCTGGAGGATTCTATCAACCGGGTTATGCAAATGGAGCGAAACTTCGATTGAAGATGATGTGTCTTGGTATGGACTGGAATCCTCAGTCTTATAAATATGGAAAGAAACGGGTGATTGATGGTAGCAAGCCACCGAGTATTCCCTATCACTTCAGTCAACTGGTTATAAGAGCAATCCAAGAAGCACATTCTATAATTAAAAAGGAAAATAGAGTATTCAAAGTGGAGGACGAACTTCCTTCAATGACTCCTGATATATGCATTGTCAATTTTTATACAAACAATGGAAAGCTTGGTCTCCATCAGGATAACGATGAAAGCAGAGAAAGTCTCCGAAAAGGGTTGCCTGTTGTGTCCTTCTCTATTGGCGATTCAGCAGAATTTCTTTATGGGGATGAGAGGAATGTAGAGAAGGCAGATAGTGTATTGCTAGAATCAGGAGATGTGTTGATATTTGGTGGTGAATCTCGACATGTTTTCCATGGTGTGTCATCAGTCTTACCAAATTCAGCCCCAAAGGAATTGTTGAGAGATACTTGTCTTTGTCCTGGTCGCCTCAATCTTACATTCAGACAGTATTAA
>Glyma01g32116.1 sequence type=predicted peptide gene model=Glyma01g32116 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLASRTLPLSTWLFHPPFTSFRRHTFLQSQISSKFTVSNKMGKVVNSNTESSLSESSSAVADCAVRKDNVMVDGPLADTPDDNEGFIMFGSIRTSLNRKNEKKHSVPWFPGCTPFVDKHSEFTSSSNHLKSTPTTTTTKFSNSMLTTSNDKSPQGSNSWKNKSASVNRTYNSASNSNFDNELPQGSNFWKKKPASVNRPYNSPNNSNYDAVGNKLDASVGSPMSKPFDICFSGRRNPALIGATLPGDNEKSCIEMQEEKIKGGILRPGMVLLKNYITLDEQVEIVKVCRELGLGPGGFYQPGYANGAKLRLKMMCLGMDWNPQSYKYGKKRVIDGSKPPSIPYHFSQLVIRAIQEAHSIIKKENRVFKVEDELPSMTPDICIVNFYTNNGKLGLHQDNDESRESLRKGLPVVSFSIGDSAEFLYGDERNVEKADSVLLESGDVLIFGGESRHVFHGVSSVLPNSAPKELLRDTCLCPGRLNLTFRQY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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