SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G36250 | AT | Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr5:14282590-14284376 FORWARD LENGTH=448 | SoyBase | E_val: 3.00E-111 | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004721 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity | SoyBase | N/A | ISS |
| GO:0004722 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0698 | KOG | Serine/threonine protein phosphatase | JGI | ISS | |
| PTHR13832 | Panther | PROTEIN PHOSPHATASE 2C | JGI | ISS | |
| PTHR13832:SF94 | Panther | PROTEIN PHOSPHATASE 2C DELTA | JGI | ISS | |
| PF00481 | PFAM | Protein phosphatase 2C | JGI | ISS | |
| UniRef100_B9SL27 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9SL27_RICCO | SoyBase | E_val: 2.00E-141 | ISS |
| UniRef100_I1J7J9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J7J9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g31850 not represented in the dataset |
Glyma01g31850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g127600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g31850.1 sequence type=CDS gene model=Glyma01g31850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGGTGTTGCAGTTGTCATGTTTCATTTGTAGGCAAGGTGCATGATGTGGAATGTGAATGTAACCATAATAATGATGATGGTGCATGTGAACATGGTGGGGCAAGGGTCATGTTAAAAGGATCCTCTACGTTTGTGTCAATGTACAGCCAAAAGGGTTCAAAAGGAGTTAATCAAGATGCATTAACAGTTTGGCAGGACTTCACTGGAAAAAAGGACATGATTTTTTGTGGGGTGTTTGATGGTCATGGTCCTCTAGGACACAAGTTATCACAGTGCATACGTGACAATCTACCCGCAAAACTGTCAGCATCAATCAAACAGTCACAAGAAAAAGCCATGAAACACTATGACGCTAATGCTACAAATGGTGGCAGTCATAGTGATGACTATGTTGAGGATAACCAAAATATGTCCTTTCCTTCATGGGAGGGAACCTTTATGAGGTGCTTCAGTGAAATAGATGAAAAGTTTGCTAAGAACATAGACACTGACGGATTTCGGGGCGGTAGCACTGCTGTAACTGTAATCAAACAGGGTGACCAATTAATAATTGGCAATGTGGGGGATTCTCGTGCAGTTCTTTGCAGAAGAGCACCTGACAATCGTCTTATTCCTGTTCAACTTACTGTTGACTTGACTCCAGATATTCCAAGAGAAGCTTTGAGGATCATTAATTGTGGAGGTAGAATTTTTGCTACAGAAGAAGATCCAAGTGTAAACAGAGTATGGATGCCTAAAGGGGACTGCCCTGGACTGGCTATGGCAAGAGCCTTTGGAAATTTTTGCTTAAAAGACTATGGTGTCACCTCGATCCCAGATGTATCATACAGAAAACTTACCAAGCAGGATGAGTTTGTGGTTTTGGCTTCTGATGGGATATGGGATATGCTATCAAACAGTGAAGTAATAAACATAGTTGCTTCAGCACCAAAAAGGTCCATGGCAGCCAAATTGTTAGTAAACCATGCTGTTCGGGCTTGGAGATATAAGCATGGTTTCAAGGTTGATGATTGTTCAGCCATATGCTTGTTCCTGAAGGATTAG
>Glyma01g31850.1 sequence type=predicted peptide gene model=Glyma01g31850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGCCSCHVSFVGKVHDVECECNHNNDDGACEHGGARVMLKGSSTFVSMYSQKGSKGVNQDALTVWQDFTGKKDMIFCGVFDGHGPLGHKLSQCIRDNLPAKLSASIKQSQEKAMKHYDANATNGGSHSDDYVEDNQNMSFPSWEGTFMRCFSEIDEKFAKNIDTDGFRGGSTAVTVIKQGDQLIIGNVGDSRAVLCRRAPDNRLIPVQLTVDLTPDIPREALRIINCGGRIFATEEDPSVNRVWMPKGDCPGLAMARAFGNFCLKDYGVTSIPDVSYRKLTKQDEFVVLASDGIWDMLSNSEVINIVASAPKRSMAAKLLVNHAVRAWRYKHGFKVDDCSAICLFLKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
