Glyma01g31670 - SoyBase

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Report for Sequence Feature Glyma01g31670

Feature Type:	gene_model
Chromosome:	Gm01
Start:	42752425
stop:	42753269
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g31670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58170	AT	Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein \| chr1:21536188-21536745 FORWARD LENGTH=185	SoyBase	E_val: 1.00E-66	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009807	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignan biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21495	Panther	NUCLEOPORIN-RELATED	JGI		ISS
PF03018	PFAM	Dirigent-like protein	JGI		ISS
UniRef100_G7JKK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance response protein n=1 Tax=Medicago truncatula RepID=G7JKK5_MEDTR	SoyBase	E_val: 1.00E-72	ISS
UniRef100_I1J7J0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7J0_SOYBN	SoyBase	E_val: 3.00E-136	ISS

Expression Patterns of Glyma01g31670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g31670

Paralog	Evidence	Comments
Glyma03g05570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g31670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g126700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g31670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g31670

Limit To All Plant Sequences

>Glyma01g31670.1   sequence type=CDS   gene model=Glyma01g31670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACTAAATTCCTCATATTCTTCTTTCTTTCCATCATTGCCCTCACCTCTGTCACTGCCGAAGATGGCACAGGTTTCGTGGGCTCACCAAACCGTAAGTTCCTGGGCCTGAAAACCAAAGAAAAACTCAGCCATTTCAGGTTCTATTGGCATGACATATTGACCGGAAGCAACCCCTCCGCTATTCAAATCATTCCCTCAGTTCCAAAATACAACACAACCACTTCGTTTGGTTTGGTAAGAATCTTAGACAACCCTTTAACCTTGGGACCGGAGTTGAGCTCGAAGCAAGTGGGGAGGGCCGAAGGGCTCTACGCGTCGGCGTCGCGGTCGGAGCTTAGCCTTCTGATGGTCATGAACTTCGCCCTAACCGAAGGAAAGTACAATGGCAGCACCATCACCATTATGGGAAGGAATAGGGCTCTCAGCAAGGTTAGCAGGGAGATGCCTGTGATTGGTGGTAGTGGGATTTTCCGGTTTGCTAGGGGATATGCCCTGGTCAAGACTCATTCTTCTGATCCTAAGACCATGCAAGCTACGGTTGAGTACAACGTTTATGTTCTTCATTATTGA

Predicted protein sequences of Glyma01g31670

Limit To All Plant Sequences

>Glyma01g31670.1   sequence type=predicted peptide   gene model=Glyma01g31670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTKFLIFFFLSIIALTSVTAEDGTGFVGSPNRKFLGLKTKEKLSHFRFYWHDILTGSNPSAIQIIPSVPKYNTTTSFGLVRILDNPLTLGPELSSKQVGRAEGLYASASRSELSLLMVMNFALTEGKYNGSTITIMGRNRALSKVSREMPVIGGSGIFRFARGYALVKTHSSDPKTMQATVEYNVYVLHY*

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