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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G41750 | AT | Annotation by Michelle Graham. TAIR10: Disease resistance protein (TIR-NBS-LRR class) family | chr5:16694047-16697527 FORWARD LENGTH=1068 | SoyBase | E_val: 4.00E-167 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| KOG4658 | KOG | Apoptotic ATPase | JGI | ISS | |
| PTHR11017 | Panther | LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR11017:SF20 | Panther | DISEASE RESISTANCE PROTEIN | JGI | ISS | |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| PF01582 | PFAM | TIR domain | JGI | ISS | |
| UniRef100_G7JKN5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tir-nbs-lrr resistance protein n=1 Tax=Medicago truncatula RepID=G7JKN5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336E9C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336E9C related cluster n=1 Tax=unknown RepID=UPI0002336E9C | SoyBase | E_val: 0 | ISS |
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Glyma01g31520 not represented in the dataset |
Glyma01g31520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g05730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g125300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g31520.2 sequence type=CDS gene model=Glyma01g31520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGATAATGTTCCTCAAATGAAGTATGATGTTTTTGTTAACTTCAGGGGCAAGGACATCCGTGACGGTTTTCTCGGTTATTTGACTCGGGCTTTTCATCAAAAGCAAATATATGCTTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAGGGATCATCGATTTCATTGACCATATTCTCCGAAAACTATACTTCTTCACGTTGGTGTTTGGAAGAACTTGTGAAAATACTTGAGTGCAGGGAGAAATACAGACAAACTGTAATACCTGTTTTCTACGGGGTAAATCCCACAGATGTGCGGCATCAGAAGGGGAATTATGGAGAAGCTCTTGCTGTACTTGGAAAGAAATATAATTTGACCACCGTGCAAAACTGGAGAAATGCTTTAAAGAAGGCTGCTGATTTATCAGGAATAAAGTCATTCGATTACAAGACTGAAGTTGATCTGCTTGGAGAAATCATCAACACTGTCAATCTTGTGTTGATAAGTTTGGATACGCATCCATTTAACATAAAAGGACATATAGGAATCGAAAAATCAATTCAACATTTAGAGTCATTGTTACACCAAGAGTCAAAATATGTCCGAGTTATTGGAATTTGGGGTATGGGCGGAATTGGAAAGACAACAATTGCAGAAGAAATGTTTAAAAAGCTATATTCCGAATATGATTCTTATTACTTTTTGGAAAATGAAGAGGAAGAATCAAGAAAGCATGGAACAATTTCGTTGAAGGAAAAACTTTTTTCTGCACTACTCGGAGAAAATGTGAAAATGAACATATTGCACGGGTTGTCAAATTATGTTAAGAGAAAGATAGGTTTTATGAAGGTTTTAATCGTTCTTGATGATGTGAATGATTCAGATTTACTAGAAAAATTAATTGGAAACCTTGATTGGTTTGGCCGAGGTAGTAGAATCATTATAACAACTAGAGATAAACAAGTGCTTATTGCAAATAAAGTTGATGATATATACCACGTTGGGGCATTGAATTCTAGTGAAGCACTGGAGCTTTTTAGTTTTTATGCCTTTAACCAAAATCATCTTGATATGGAGTATTATAAGCTATCAAAGAGAGTGGTCAATTATTCCCAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTTGTGGGAAAGATAAGGAAGTATGGGAAAGTCAGCTAGACAAACTTAAAAACATGCCAAATACAGATATTTACAATGCAATGAGATTGAGTTATGATGATCTAGATCGTAAAGAACAAAAGATTCTTTTAGATCTTGCATGTTTTTTCATGGGATTGAATTTGAAAGTAGACCACATAAAAGTTCTATTGAAAGATAGCGAAAAAGATGATTCAGTGGTTGTTGGGTTAGAAAGATTGAAAGATAAGGCTCTTATAACCATTTCTGAAGATAATATTATATCTATGCACGACATCATACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAATCAATTGAAGACCCAGGAAATCGAAGCCGATTGATGGATCCTAATGACATTTATGAAGTATTAAAATATAACAAGGGGACTGAAGCCATAAGAAGCATAAGGGCAGACATGTCAGTAATTAGGAAGCTGCAGTTAAGCCCTCACATATTTACTAAGATGAGCAAACTGCAGTTTTTGTATTTTCCTAGCAAATATAATCAAGATGGCCTTTCTCTCCTTCCTCACGGGCTTCAATCTTTCCCAGTTGAGCTAAGATATGTTGCTTGGATGCACTACCCTCTAAAGTCCTTGCCTAAGAACTTTTCTGCCAAAAACATTGTTATGTTTGACTTGTCTTGTAGCCAAGTGGAAAAACTTTGGGATGGAGTGCAGAATTTGATGAATTTAAAAGAACTTAAAGTCTCCGGTTCTGAAAACTTGAAGGAGCTGCCAGACCTTTCAAAAGCGACAAATCTTGAAGTGCTGGATATCAATATATGTCCTAGGTTGACTAGTGTGTCTCCATCTATTTTGTCTCTCAAGAGATTGTCTATAGCTTATTGTTCCCTTACAAAAATTACAAGCAAGAACCACCTACCCTCCCTTAGTTTTCTCAACCTTGAATCATGCAAAAAACTAAGGGAATTTTCAGTGACATCAGAGAATATGATTGAACTTGATTTATCATCCACTCGTGTCAATTCATTGCCTTCATCTTTTGGACGTCAAAGCAAGCTCAAAATCCTACGGCTAAGAGACAGTGGCATCAATAGTTTGCCTTCAAGCTTCAAGAATCTTACAAGACTGCAATATCTGACTGTATATAAATCCAGGGAGCTTTGTACTCTAACAGAGCTTCCCCTATCCCTTAAAACTCTAGATGCCACAGATTGCACATCATTGAAGACTGTATTGTTTCCATCAATTGCTCAGCAATTCAAGGAAAACAGGAAGGAAGTTCTGTTTTGGAATTGCTTGAAATTGGATGAACATTCTCTCAAGGCTATTGGGTTAAATGCACATATTAACGTGATGAGATTTGCATACCAACATTTATCTGCACCAGATGAAAATTATGATGATTACGATCGTACTTATGAATCTTATCAGGTAAAGTATGTGTATCCAGGAGGCATAGTTCCAGAGTGGATGGAGTATAAAACAACAAAGGATTATATAATTATTGATCTCTCTTCTAGTCCACACTCCTCACAATTGGGCTTCATTTTCAGCTTTGTTATCTCTGGTCCTATGGTGAAGGCAATAATGGGTTACAGATTTACATTTTATATCACTGTCAGTGATGATGAGGACGAAAATAAAAAGGATAGTATCGACATCTACATGTCTGACTCAATTGTCTGGGTTGCATCAGATCATGTGTGTGTGATTTATGACCAACGATGTTCTCGCTACCTAAACAGTAGAGTCAAAAATCAAACAAGGTTTAAAATCAAGGTTGAAGCAATGGCAGCAGCGGTGGCTCATCAGAGGGGCGTGGGGTTAAAAGGGTTTGGAGTCAGCCCAATAAACACCTCAGCATATCACAATTTCAGGAAACACATAAACACCACAGCATATCACAATTTCATTCAGGAAATGAACATCCCAGCAGATCACAGTTTCATTCAGAAAATAAAAGCCACAGCAGATCATAGTTTGATTCAACAAATGGAAGCAGACTTTGCTTTAGACATAAGTTCTTTTATGTAA
>Glyma01g31520.2 sequence type=predicted peptide gene model=Glyma01g31520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLDNVPQMKYDVFVNFRGKDIRDGFLGYLTRAFHQKQIYAFIDDKLEKGDEIWPSLVGAIQGSSISLTIFSENYTSSRWCLEELVKILECREKYRQTVIPVFYGVNPTDVRHQKGNYGEALAVLGKKYNLTTVQNWRNALKKAADLSGIKSFDYKTEVDLLGEIINTVNLVLISLDTHPFNIKGHIGIEKSIQHLESLLHQESKYVRVIGIWGMGGIGKTTIAEEMFKKLYSEYDSYYFLENEEEESRKHGTISLKEKLFSALLGENVKMNILHGLSNYVKRKIGFMKVLIVLDDVNDSDLLEKLIGNLDWFGRGSRIIITTRDKQVLIANKVDDIYHVGALNSSEALELFSFYAFNQNHLDMEYYKLSKRVVNYSQGIPLVLKVLGHLLCGKDKEVWESQLDKLKNMPNTDIYNAMRLSYDDLDRKEQKILLDLACFFMGLNLKVDHIKVLLKDSEKDDSVVVGLERLKDKALITISEDNIISMHDIIQEMAWEIVRQESIEDPGNRSRLMDPNDIYEVLKYNKGTEAIRSIRADMSVIRKLQLSPHIFTKMSKLQFLYFPSKYNQDGLSLLPHGLQSFPVELRYVAWMHYPLKSLPKNFSAKNIVMFDLSCSQVEKLWDGVQNLMNLKELKVSGSENLKELPDLSKATNLEVLDINICPRLTSVSPSILSLKRLSIAYCSLTKITSKNHLPSLSFLNLESCKKLREFSVTSENMIELDLSSTRVNSLPSSFGRQSKLKILRLRDSGINSLPSSFKNLTRLQYLTVYKSRELCTLTELPLSLKTLDATDCTSLKTVLFPSIAQQFKENRKEVLFWNCLKLDEHSLKAIGLNAHINVMRFAYQHLSAPDENYDDYDRTYESYQVKYVYPGGIVPEWMEYKTTKDYIIIDLSSSPHSSQLGFIFSFVISGPMVKAIMGYRFTFYITVSDDEDENKKDSIDIYMSDSIVWVASDHVCVIYDQRCSRYLNSRVKNQTRFKIKVEAMAAAVAHQRGVGLKGFGVSPINTSAYHNFRKHINTTAYHNFIQEMNIPADHSFIQKIKATADHSLIQQMEADFALDISSFM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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