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Report for Sequence Feature Glyma01g30080

Feature Type:gene_model
Chromosome:Gm01
Start:40777030
stop:40778052
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g30080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39340AT Annotation by Michelle Graham. TAIR10: SAC3/GANP/Nin1/mts3/eIF-3 p25 family | chr2:16424043-16429771 FORWARD LENGTH=1006 SoyBaseE_val: 5.00E-24ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR12436Panther 80 KDA MCM3-ASSOCIATED PROTEIN JGI ISS
PTHR12436:SF4Panther LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8 JGI ISS
PF03399PFAM SAC3/GANP/Nin1/mts3/eIF-3 p25 family JGI ISS
UniRef100_B9SGG2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leukocyte receptor cluster (Lrc) member, putative n=1 Tax=Ricinus communis RepID=B9SGG2_RICCO SoyBaseE_val: 9.00E-27ISS
UniRef100_UPI000233DE2AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DE2A related cluster n=1 Tax=unknown RepID=UPI000233DE2A SoyBaseE_val: 3.00E-33ISS

Expression Patterns of Glyma01g30080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g30080 not represented in the dataset
Glyma01g30080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g30080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma01g30080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g30080
>Glyma01g30080.1   sequence type=CDS   gene model=Glyma01g30080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACTCTTGAAACAATGCTTCAGGTGTATGAAACACAAGCTCGATTGGCACTGGAATTTGGGGACCTGTTTAAGTATAATCAGTGCCAATCTCACTTGCAAACTCTTTATGTCGAAGGCATTGAGGGGTCTGATATGGAATTTTCCGCTTACAACTTGCTTTGTGTCATAATGCATTCAAATAATAACAGAGATCTTGTATCATCAATAGCAAGGTTAGCTCCTTACTTACATGTTTACTTGATTCTTTTTTCCAAAATAATTGTTAGAACTGAATTATACGGTTATGATATAATCATCGTAGAAAATCATTTATTGAACATATTTACTAAGACGATTGATGTAGCGACCGTCGTAGAACAGCCAATAAAATGA
Predicted protein sequences of Glyma01g30080
>Glyma01g30080.1   sequence type=predicted peptide   gene model=Glyma01g30080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITLETMLQVYETQARLALEFGDLFKYNQCQSHLQTLYVEGIEGSDMEFSAYNLLCVIMHSNNNRDLVSSIARLAPYLHVYLILFSKIIVRTELYGYDIIIVENHLLNIFTKTIDVATVVEQPIK*






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