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Report for Sequence Feature Glyma01g29630

Feature Type:gene_model
Chromosome:Gm01
Start:39945736
stop:39949387
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05580AT Annotation by Michelle Graham. TAIR10: fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435 SoyBaseE_val: 0ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016717GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water SoyBaseN/AISS
GO:0042389GO-mf Annotation by Michelle Graham. GO Molecular Function: omega-3 fatty acid desaturase activity SoyBaseN/AISS
PTHR19353Panther FATTY ACID DESATURASE 2 JGI ISS
PTHR19353:SF7Panther DELTA-6/DELTA-8 SPHINGOLIPID DESATURASE JGI ISS
PF00487PFAM Fatty acid desaturase JGI ISS
PF11960PFAM Domain of unknown function (DUF3474) JGI ISS
UniRef100_B8XJZ1UniRef Annotation by Michelle Graham. Best UniRef hit: Fatty acid desaturase 8 n=1 Tax=Glycine max RepID=B8XJZ1_SOYBN SoyBaseE_val: 0ISS
UniRef100_B8XJZ1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fatty acid desaturase 8 n=1 Tax=Glycine max RepID=B8XJZ1_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
FAD8-1 omega-3 fatty acid desaturase 8 gene 1
FAD8 Fatty acid desaturase 8

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g07570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g120400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g29630.4   sequence type=transcript   gene model=Glyma01g29630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCACACGTGATAAATTAGATGTCTCCATAGTCCTTACTCAACTACAGGGGAGCCACTCATGAAATTGGGTTAGTTATAGTGATGCATCATCAACCAATGGGGTTCCACCAAAAGCAAAGGCAATAGAATAGGAGTCTCCACTTCAAGTTGCACCAAAAAAACAAGGTCAAACCCAAAAGGAAAGGTAGGGAGCAGTGAATTTCCATTCCATCAAGGGATGGGAACCCAACACAAGAACGAGGAATTTAAAAGTGAACACTACAGAAAAAAAAAATGTCCTAATTGCTCTACACCCTCTTATATATAAAGATGGTGATTTTAATCTCTAGGCCACAAAAATGAACCAGATTTGAGAACATCCCTTGTATTGAAGAACACCCTCTTTGGATACCCTTTTGTTAAAGCCAAGACTTTTCTCAGATTTGAGAAGAAGAAGAAGGTGGGGGAGGAGATAGTAATAGGGAAAACATAAGAGAGAGAAAAATAAAGCACAAACGTGAGGCCGTTGTTGAAACACACAAGTTGTGTTCCTGTTGTGAATATCTTAAATTTCTCAACTTGTGTTTGTTTGTCGTCCTATAATTGTAGGTTCAGTTGCATCCTTATATTTTGGTTCACATATTCTCTGTCTCTCTGTCTCTCCTCTGTCCTATAACTTTACCTTTCTATCCTCAGGAACCATGAAGTAGTAGTGAAGAACTAATCAGCCACAAATCCAAACGACCCCTTTGGCCTAAAGCTCCCTCCTTTTCTCCAATGGCAACATGGGTTTTATCAGAATGTGGCTTAAGGTCTCTTCCACCAGTGTTTCCCAGGCCAACAAGACCCATTTCGTGCCAAAAGCCTTCAAAGTTTAGATTTTTAAGCATAAACAAGGGGGTGGCAGATCTGAATCTCCAACCAAGAGGGTTCACATGTTATAACTTTAGGGAGAGAAAGTGGGAATCGGGAGTGAGTGCTCCACTGAAGGTTGCCACCACTGAGGGAGAGGAAGAAGAGGGAATCAATGGGGCTAATGGGGTTGTTGAGGAAGTACCAGAATTTGACCCTAGTGCACCACCACCCTTCAAATTGGCAGATATTAGAGCTTCCATTCCTAAACACTGTTGGGTGAAGGACCCTTGGAAGTCCATGAGTTATGTTGTTAGAGATGTCATTGTGGTTTTTGGGTTGGCTGTTGCTGCAGCTTATCTCAACAATTGGGTTGTTTGGCCTCTCTATTGGGCTGCTCAGGGAACCATGTTCTGGGCCCTCTTTGTTCTTGGACATGATTGTGGTCATGGAAGCTTTTCAAACAATCCTAAGCTGAACAGTGTTGCTGGCCACTTGCTGCATTCTTCAATTCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTTGAAAACGATGAATCTTGGCACCCGTTGCCGGAGAAAATTTTCAAGAGCTTGGATAATGTAACACGTATTTTAAGATTTACATTACCTTTTCCATTGCTTGCATATCCTATCTACCTGTGGAGCAGGAGTCCCGGGAAGACTGGTTCTCACTTTAATCCTGACAGTGACTTGTTTGTTCCCAGTGAGAGAAAAGATGTTATTACCTCAACAGTTTGTTGGACAGCTATGGCTGCTTTGCTTGTTGGTTTGGGATTTGTGATGGGTCCTGTTCAATTGCTTAAGCTTTATGGCATTCCCTATGTGATTTTTGTTATGTGGTTGGATTTGGTGACTTATTTGCATCACCATGGCCATGAAGACAAGTTACCTTGGTATCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTATGGATGGATCAACAACATTCACCATGACATTGGAACCCATGTCATTCATCACCTCTTTCCTCAAATACCACACTATCACTTAATAGAAGCAACTGAGGCAGCTAAGCCGGTTCTTGGCCTATACTACCGGGAGCCAAAGAAGTCTAGTCCTCTTCCAATTTACCTTATTGGAGAATTGTTAAGAAGCATGAAGAAAGACCATTTTGTCAGTAACACTGGTGATATTGTGTACTATCAAACAGACCCTACACTTAGTAGCTCTTCCACATCACAGTAAATCATCCATTTTTTCCTCTTGAATACAAGAGAGGCCTCAGAATTATGCTGCATATGACAATATCTGAACCTTGAAGATTGTGTACTCTCATTGAGTCCTACTAGTTGAATTGCTCAAGTAGGAATGAATGCATGACAAATTTGATTGTAATTGCATGCATTTTAAAGCATGATCAGGGTATATATGTAATGTGTTCTCGTTGAAGAACAAGGAATCTGTAAATTGCTCATTCTTGATGAAGGATTTAGTTACAATTTTTTTCTCAAACTCAAACACCAATATTGAATACAATTGTAGCAAGTAGCAACTGATGTCATTTTCTTCTGCTTATCACTTTCCGTATTCATCTTGAATTAGTGGTTGCTGATATTTCTTGAGATATTGTGTCACTTTAAGTAATCTTATCGTGCACTTTATTTAAGGTTGTTTGTGTTTTTGTCCAATTATGCAAGGTTGCAAAATATGGTGTTTCTAT

>Glyma01g29630.3   sequence type=CDS   gene model=Glyma01g29630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACATGGGTTTTATCAGAATGTGGCTTAAGGTCTCTTCCACCAGTGTTTCCCAGGCCAACAAGACCCATTTCGTGCCAAAAGCCTTCAAAGTTTAGATTTTTAAGCATAAACAAGGGGGTGGCAGATCTGAATCTCCAACCAAGAGGGTTCACATGTTATAACTTTAGGGAGAGAAAGTGGGAATCGGGAGTGAGTGCTCCACTGAAGGTTGCCACCACTGAGGGAGAGGAAGAAGAGGGAATCAATGGGGCTAATGGGGTTGTTGAGGAAGTACCAGAATTTGACCCTAGTGCACCACCACCCTTCAAATTGGCAGATATTAGAGCTTCCATTCCTAAACACTGTTGGGTGAAGGACCCTTGGAAGTCCATGAGTTATGTTGTTAGAGATGTCATTGTGGTTTTTGGGTTGGCTGTTGCTGCAGCTTATCTCAACAATTGGGTTGTTTGGCCTCTCTATTGGGCTGCTCAGGGAACCATGTTCTGGGCCCTCTTTGTTCTTGGACATGATTGTGGTCATGGAAGCTTTTCAAACAATCCTAAGCTGAACAGTGTTGCTGGCCACTTGCTGCATTCTTCAATTCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTTGAAAACGATGAATCTTGGCACCCGTTGCCGGAGAAAATTTTCAAGAGCTTGGATAATGTAACACGTATTTTAAGATTTACATTACCTTTTCCATTGCTTGCATATCCTATCTACCTGTGGAGCAGGAGTCCCGGGAAGACTGGTTCTCACTTTAATCCTGACAGTGACTTGTTTGTTCCCAGTGAGAGAAAAGATGTTATTACCTCAACAGTTTGTTGGACAGCTATGGCTGCTTTGCTTGTTGGTTTGGGATTTGTGATGGGTCCTGTTCAATTGCTTAAGCTTTATGGCATTCCCTATGTGATTTTTGTTATGTGGTTGGATTTGGTGACTTATTTGCATCACCATGGCCATGAAGACAAGTTACCTTGGTATCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTATGGATGGATCAACAACATTCACCATGACATTGGAACCCATGTCATTCATCACCTCTTTCCTCAAATACCACACTATCACTTAATAGAAGCAACTGAGGCAGCTAAGCCGGTTCTTGGCCTATACTACCGGGAGCCAAAGAAGTCTAGTCCTCTTCCAATTTACCTTATTGGAGAATTGTTAAGAAGCATGAAGAAAGACCATTTTGTCAGTAACACTGGTGATATTGTGTACTATCAAACAGACCCTACACTTAGTAGCTCTTCCACATCACAGTAA

>Glyma01g29630.4   sequence type=CDS   gene model=Glyma01g29630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACATGGGTTTTATCAGAATGTGGCTTAAGGTCTCTTCCACCAGTGTTTCCCAGGCCAACAAGACCCATTTCGTGCCAAAAGCCTTCAAAGTTTAGATTTTTAAGCATAAACAAGGGGGTGGCAGATCTGAATCTCCAACCAAGAGGGTTCACATGTTATAACTTTAGGGAGAGAAAGTGGGAATCGGGAGTGAGTGCTCCACTGAAGGTTGCCACCACTGAGGGAGAGGAAGAAGAGGGAATCAATGGGGCTAATGGGGTTGTTGAGGAAGTACCAGAATTTGACCCTAGTGCACCACCACCCTTCAAATTGGCAGATATTAGAGCTTCCATTCCTAAACACTGTTGGGTGAAGGACCCTTGGAAGTCCATGAGTTATGTTGTTAGAGATGTCATTGTGGTTTTTGGGTTGGCTGTTGCTGCAGCTTATCTCAACAATTGGGTTGTTTGGCCTCTCTATTGGGCTGCTCAGGGAACCATGTTCTGGGCCCTCTTTGTTCTTGGACATGATTGTGGTCATGGAAGCTTTTCAAACAATCCTAAGCTGAACAGTGTTGCTGGCCACTTGCTGCATTCTTCAATTCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTTGAAAACGATGAATCTTGGCACCCGTTGCCGGAGAAAATTTTCAAGAGCTTGGATAATGTAACACGTATTTTAAGATTTACATTACCTTTTCCATTGCTTGCATATCCTATCTACCTGTGGAGCAGGAGTCCCGGGAAGACTGGTTCTCACTTTAATCCTGACAGTGACTTGTTTGTTCCCAGTGAGAGAAAAGATGTTATTACCTCAACAGTTTGTTGGACAGCTATGGCTGCTTTGCTTGTTGGTTTGGGATTTGTGATGGGTCCTGTTCAATTGCTTAAGCTTTATGGCATTCCCTATGTGATTTTTGTTATGTGGTTGGATTTGGTGACTTATTTGCATCACCATGGCCATGAAGACAAGTTACCTTGGTATCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTATGGATGGATCAACAACATTCACCATGACATTGGAACCCATGTCATTCATCACCTCTTTCCTCAAATACCACACTATCACTTAATAGAAGCAACTGAGGCAGCTAAGCCGGTTCTTGGCCTATACTACCGGGAGCCAAAGAAGTCTAGTCCTCTTCCAATTTACCTTATTGGAGAATTGTTAAGAAGCATGAAGAAAGACCATTTTGTCAGTAACACTGGTGATATTGTGTACTATCAAACAGACCCTACACTTAGTAGCTCTTCCACATCACAGTAA

>Glyma01g29630.3   sequence type=predicted peptide   gene model=Glyma01g29630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATWVLSECGLRSLPPVFPRPTRPISCQKPSKFRFLSINKGVADLNLQPRGFTCYNFRERKWESGVSAPLKVATTEGEEEEGINGANGVVEEVPEFDPSAPPPFKLADIRASIPKHCWVKDPWKSMSYVVRDVIVVFGLAVAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFKSLDNVTRILRFTLPFPLLAYPIYLWSRSPGKTGSHFNPDSDLFVPSERKDVITSTVCWTAMAALLVGLGFVMGPVQLLKLYGIPYVIFVMWLDLVTYLHHHGHEDKLPWYRGEEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGLYYREPKKSSPLPIYLIGELLRSMKKDHFVSNTGDIVYYQTDPTLSSSSTSQ*

>Glyma01g29630.4   sequence type=predicted peptide   gene model=Glyma01g29630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATWVLSECGLRSLPPVFPRPTRPISCQKPSKFRFLSINKGVADLNLQPRGFTCYNFRERKWESGVSAPLKVATTEGEEEEGINGANGVVEEVPEFDPSAPPPFKLADIRASIPKHCWVKDPWKSMSYVVRDVIVVFGLAVAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFKSLDNVTRILRFTLPFPLLAYPIYLWSRSPGKTGSHFNPDSDLFVPSERKDVITSTVCWTAMAALLVGLGFVMGPVQLLKLYGIPYVIFVMWLDLVTYLHHHGHEDKLPWYRGEEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGLYYREPKKSSPLPIYLIGELLRSMKKDHFVSNTGDIVYYQTDPTLSSSSTSQ*







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