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Report for Sequence Feature Glyma01g29600

Feature Type:gene_model
Chromosome:Gm01
Start:39918098
stop:39921140
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g29600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G60750AT Annotation by Michelle Graham. TAIR10: Transketolase | chr3:22454004-22456824 FORWARD LENGTH=741 SoyBaseE_val: 9.00E-53ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0030243GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004802GO-mf Annotation by Michelle Graham. GO Molecular Function: transketolase activity SoyBaseN/AISS
PTHR11624Panther DEHYDROGENASE RELATED JGI ISS
PTHR11624:SF1Panther 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE JGI ISS
PF00456PFAM Transketolase, thiamine diphosphate binding domain JGI ISS
UniRef100_G7IF28UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transketolase n=1 Tax=Medicago truncatula RepID=G7IF28_MEDTR SoyBaseE_val: 2.00E-60ISS
UniRef100_I1J7D5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J7D5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g29600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g29600 not represented in the dataset
Glyma01g29600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g29600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g120200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g29600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g29600
>Glyma01g29600.1   sequence type=CDS   gene model=Glyma01g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGATAAAGATGCACTAGTAGAAGTTGACACTGGTTCTGGCAGTCATTCTGGTACTAAGGATATTATTGAGTTTGAGGCCTCACTTTGTGGTCATGAACTTAAAGCGGGTATGGGTTTGGTTGCTGCTGCCGAGGTTTTTGAAGCACATCGGATATCTGCAAAAGAATTTAGAAGTTCTACATTATCCATAATTAAGAATGAAAATCTTGTTCTGAAGTTTAGAGAGAGGTATCTACTGTGGGAAAAGGTTGCTCCTCTTGTACTTGGAATAACTGTATTTGGTTTAGACTTACTTATTGAGCCTAAAGATACAATTCCAGTGGGACTGGATGATGTAGTGAAGGCCAAGAATGATGCTCCTGGACCAGCTTCATCTGGACGCAGATGGAGACTTTGGCCTATGCCTTTTCGAAGAGTCAAGACAATTGATCACACTAATAGTGTATCAAGTGAGGAGGTATTTGTAGATTCTAAGTCTGATTTCCAAACTTCTATTGTCGAGCCATCTCCAACATCTGCTATGCCTATTTCCAAATTCATTACTATTTCACAGGTAATCACTACCATTGGATTTGCTTATCCAAACAAGGCTAATTCCTACAGTTGGATGCTACAAGGAAGAATCTTGGATAGCCATACGAGCCTTTCCATGTGCCAGAAGATGTCAAGAAGTATGGATGGGGAGCATTGGAGTCGCCATACCCCTAAGGGTACTAAACTTGAAGCTGAGTGGAATGCCAAGTTTGTGGAATATGAGAAGAAATACAATGAGGAAGCTGCAAAGCTAAAGGCTATTATTATTGGCAAATTACCAGGGAGAAAGCGCGCACTTCTGTACATTGCATCTTTACTCATCATCCATCTTTTTGCTTCATGCATCTTTCATACATACACTCCAAAAAGCCCTGCAGATGCTACAAGAAATTTAGTTGCCATATGGATTTCTGCACTGTGTGAAGCTGGAGTTATTTATCCAATAGAGCATTTGGCAAGCTTCAGGGCAATGCCAAACACTTTCATGCTTCGTCCAGCTGATGGTAATGACACTGCTGGATCATACAAAGTTGTTGTGGTTAACAAGAAGAGACCCTCAATTGTTGCACTTTGTTGGCAAAAGTTGACCCAACTTCCAAGAACTTCTATTGAGGGAGTTGAAAAGGGTGGCTACCTCATTTCCGACAACTCATCAAGTAACAAGCCTGATGTTATTTTGATTGGAACTGGTTCTAAGTTGGAAATTGTTGTTGCTTTTGCTGAGGATCTATGGAAGGAAGGAAAAGTTGTCATAGTTTCAGATGAATTCAACGAGAGTGTTCTACCTGCTTCAATAACAGCTAGAGTTAGCATTGAGGCAGGATCAACATTTGGTTGCCACAATCGAGCGTTCGCTAAGCGCAACACTCCTGGGCTAAGCGTGAGGAAGAATCCAGAAGAAGATGAGTTGTACAGCGAGAAAGGCGCGCTAAGCCAAAAATCACTAACGTGCACTAAGCGGTCCATATATTTTGTGAGGGGAGTTTGCATTGGGATTAAGAGCTTTTCATGTCTAGGGTTTCTTAAGAGAGAAAGCTCCAAATGCATGCTTTGTCAGGGTCATTCAACAGTGGAAACTGGTCTAACTCTAAAGTCCTTGATAGTGCAGGGTTGA
Predicted protein sequences of Glyma01g29600
>Glyma01g29600.1   sequence type=predicted peptide   gene model=Glyma01g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VDKDALVEVDTGSGSHSGTKDIIEFEASLCGHELKAGMGLVAAAEVFEAHRISAKEFRSSTLSIIKNENLVLKFRERYLLWEKVAPLVLGITVFGLDLLIEPKDTIPVGLDDVVKAKNDAPGPASSGRRWRLWPMPFRRVKTIDHTNSVSSEEVFVDSKSDFQTSIVEPSPTSAMPISKFITISQVITTIGFAYPNKANSYSWMLQGRILDSHTSLSMCQKMSRSMDGEHWSRHTPKGTKLEAEWNAKFVEYEKKYNEEAAKLKAIIIGKLPGRKRALLYIASLLIIHLFASCIFHTYTPKSPADATRNLVAIWISALCEAGVIYPIEHLASFRAMPNTFMLRPADGNDTAGSYKVVVVNKKRPSIVALCWQKLTQLPRTSIEGVEKGGYLISDNSSSNKPDVILIGTGSKLEIVVAFAEDLWKEGKVVIVSDEFNESVLPASITARVSIEAGSTFGCHNRAFAKRNTPGLSVRKNPEEDELYSEKGALSQKSLTCTKRSIYFVRGVCIGIKSFSCLGFLKRESSKCMLCQGHSTVETGLTLKSLIVQG*






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