Glyma01g29255 - SoyBase

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Report for Sequence Feature Glyma01g29255

Feature Type:	gene_model
Chromosome:	Gm01
Start:	39318954
stop:	39319509
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g29255

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12050	AT	Annotation by Michelle Graham. TAIR10: Aha1 domain-containing protein \| chr3:3839289-3841303 FORWARD LENGTH=321	SoyBase	E_val: 5.00E-49	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0001671	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activator activity	SoyBase	N/A	ISS
GO:0051087	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chaperone binding	SoyBase	N/A	ISS
PTHR13009	Panther	HEAT SHOCK PROTEIN 90 (HSP90) CO-CHAPERONE AHA-1	JGI		ISS
PF08327	PFAM	Activator of Hsp90 ATPase homolog 1-like protein	JGI		ISS
UniRef100_G7KW94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Activator of 90 kDa heat shock protein ATPase-like protein n=1 Tax=Medicago truncatula RepID=G7KW94_MEDTR	SoyBase	E_val: 7.00E-51	ISS
UniRef100_UPI0002336C83	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C83 related cluster n=1 Tax=unknown RepID=UPI0002336C83	SoyBase	E_val: 7.00E-62	ISS

Expression Patterns of Glyma01g29255

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g29255 not represented in the dataset	Glyma01g29255 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g29255 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g118100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g29255

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g29255

Limit To All Plant Sequences

>Glyma01g29255.1   sequence type=CDS   gene model=Glyma01g29255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGAATAGGTGGAAGGGTTTTACACAGAGCAATGTGAGGATTAGTAAGGAGGTTGAGGGTGAGTTTAGCATTTTTTATGGGTCGGTTACTGGAACTAATTTGGAGTTGCAGGAGGGTAAGTTGATTGTTCAGAGATGGAGGCTTGTGTTTGAGGAGCCTGAATCGGGTGTTACGGTTGTTAAGCTAACACATACTGATGTGCCTGAAGAGGATAGTTTTGTTTTTGTTTTATTTTGTTTGTATGGGAATGCTACTATGGTGGAGAACACGGAAAGGGGGTGGCGGCATCTTATTTTCCAGAGGATACATGCTATTTTTGGTTTTGGAATTTAG

Predicted protein sequences of Glyma01g29255

Limit To All Plant Sequences

>Glyma01g29255.1   sequence type=predicted peptide   gene model=Glyma01g29255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDENRWKGFTQSNVRISKEVEGEFSIFYGSVTGTNLELQEGKLIVQRWRLVFEEPESGVTVVKLTHTDVPEEDSFVFVLFCLYGNATMVENTERGWRHLIFQRIHAIFGFGI*

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