SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G01320 | AT | Annotation by Michelle Graham. TAIR10: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr5:129484-131625 REVERSE LENGTH=603 | SoyBase | E_val: 0 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004737 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyruvate decarboxylase activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity | SoyBase | N/A | ISS |
| GO:0030976 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding | SoyBase | N/A | ISS |
| KOG1184 | KOG | Thiamine pyrophosphate-requiring enzyme | JGI | ISS | |
| PTHR18968 | Panther | THIAMINE PYROPHOSPHATE ENZYMES | JGI | ISS | |
| PTHR18968:SF4 | Panther | 2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE | JGI | ISS | |
| PF00205 | PFAM | Thiamine pyrophosphate enzyme, central domain | JGI | ISS | |
| PF02775 | PFAM | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | JGI | ISS | |
| PF02776 | PFAM | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | JGI | ISS | |
| UniRef100_Q84V95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001CAB2F9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001CAB2F9 related cluster n=1 Tax=unknown RepID=UPI0001CAB2F9 | SoyBase | E_val: 0 | ISS |
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Glyma01g29190 not represented in the dataset |
Glyma01g29190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g118000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g29190.2 sequence type=transcript gene model=Glyma01g29190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTCAATATGAATGGTTTGCCAGTTTATAGTAGCTGTGGTGAATAACATAGAAGATGCTCATGAATTGATTGATACTGCAATCTCAACCTGCCTGAAAGAAAGCAAGCCTGTGTACATAAGCATAAGTTGTAACTTGCCTGGCATTCCTCACCCCACATTCAGTCGCGAGCCGGTTCCATTTTCTCTGTCTCCAAGATTGAGTAACAAGATGGGGTTGGAGGCTGCAGTGGAAGCAGCAGCAGAGTTCCTAAACAAGGCAGTGAAGCCTGTAATGGTTGGAGGTCCTAAACTAAGGGTGGCTAATGCATGTGATGCATTTGTTGAGCTTGCTGATGCATGTGGCTATCCATTTGCTGTGATGCCATCAGCCAAGGGACTAGTCCCGGAGCACAAACCCCACTTCATTGGCACATTCTGGGGTGCTGTGAGCACCGCATTCTGTGCTGAAATCGTCGAATCTGCTGATGCATACTTGTTTGCTGGCCCCATTTTCAATGACTACAGCTCTGTTGGGTACTCACTCCTCCTCAAGAAGGAGAAGGCCATCATCGTGCAGCCGGAGCGCGTTGTGATCTCCAATGGACCCGCATTCGGGTGTGTCCTCATGAAGGACTTCCTCAGGGAACTCGCAAAGCGTCTCAAGCACAACAACACTGCTTATGAAAATTACTCAAGGATTTTTGTCCCTGAGGGAAAGCCTGTGAAAGCTGAACCCAGAGAGCCTTTGAGGGTTAATGTTCTGTTTAAGCATATACAAGATATGCTGTCTGGCGAAACCGCGGTGATTGCTGAGACAGGGGACTCTTGGTTTAACTGCCAGAAGCTGAAGTTGCCAAAGGGGTGTGGGTATGAGTTCCAAATGCAATATGGTTCAATTGGTTGGTCTGTTGGTGCTACACTTGGTTATGCTCAGGCGGTTCCTGAGAAGCGAGTGATTTCTTGCATTGGTGATGGAAGCTTTCAGGTGACAGCTCAGGATGTGTCCACAATGCTGCGAAATGAGCAGAAGACCATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTGAAATTCATGATGGGCCATACAATGTGATTAAGAACTGGAACTACACTGGCTTGGTTGATGCAATCCACAATGGTGAAGGAAAATGCTGGACCACTAAGGTTACATGTGAAGAGGAGCTTGTTGAGGCAATTCAGACAGCAACAGGTGACAAGAAAGATTGCTTGTGCTTCATTGAAGTGATTGTTCACAAGGATGACACAAGCAAAGAATTGCTTGAATGGGGCTCAAGGGTTTGTGCTGCTAACGGTCGTCCTCCCAATCCTCAGTGAATTTCAAACACTTAATTGAGCCATTACAAATTTGCTGGAGTTTCTCCCTATTTCAAACACTTACTCTTGCTGATAGAAAAAAGAAAATAGAACAATTTAATTTCATGTTTTATTTAACAAAGACAATAACTACCATGAGATTTACTTATATTTATTTTTAAATAAAATTGAGTTTTTTAATTAGCTTTCAC
>Glyma01g29190.1 sequence type=CDS gene model=Glyma01g29190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACTAACATTGGATCTCTATCCCTCGACGCGTGCAAGCCTGCTAACAACGACGTCGGTTGTCCCCCGAACGGAGCCGTTTCAGCAATCAAACCCTCCGTCCCCGCAACCACGATGACGTCCTCGGATGCCACGCTAGGACGCCACCTAGCACGGAGACTCGTGCAGGTGGGGGTGACAGACGTCTTCTCCGTGCCGGGTGACTTTAACCTCACCCTCCTCGACCACCTCATCGCGGAGCCGCAGTTGAAAAACATAGGATGTTGTAACGAACTCAATGCCGGGTACGCTGCTGACGGCTACGCGCGGTGCAGGGGCGTGGGCGCGTGTGTCGTCACGTTTACTGTTGGAGGACTGAGTGTAATCAACGCGATTGCGGGCGCGTACAGCGAGAATCTTCCGCTGATCTGTATTGTGGGTGGGCCCAATACGAACGATTTTGGTACCAACAGAATCTTGCATCACACCATTGGATTGTCCGATTTCAGCCAGGAGCTCAGGTGCTTCCAAACAGTTACATGCTATCAGGCTGTGGTGAATAACATAGAAGATGCTCATGAATTGATTGATACTGCAATCTCAACCTGCCTGAAAGAAAGCAAGCCTGTGTACATAAGCATAAGTTGTAACTTGCCTGGCATTCCTCACCCCACATTCAGTCGCGAGCCGGTTCCATTTTCTCTGTCTCCAAGATTGAGTAACAAGATGGGGTTGGAGGCTGCAGTGGAAGCAGCAGCAGAGTTCCTAAACAAGGCAGTGAAGCCTGTAATGGTTGGAGGTCCTAAACTAAGGGTGGCTAATGCATGTGATGCATTTGTTGAGCTTGCTGATGCATGTGGCTATCCATTTGCTGTGATGCCATCAGCCAAGGGACTAGTCCCGGAGCACAAACCCCACTTCATTGGCACATTCTGGGGTGCTGTGAGCACCGCATTCTGTGCTGAAATCGTCGAATCTGCTGATGCATACTTGTTTGCTGGCCCCATTTTCAATGACTACAGCTCTGTTGGGTACTCACTCCTCCTCAAGAAGGAGAAGGCCATCATCGTGCAGCCGGAGCGCGTTGTGATCTCCAATGGACCCGCATTCGGGTGTGTCCTCATGAAGGACTTCCTCAGGGAACTCGCAAAGCGTCTCAAGCACAACAACACTGCTTATGAAAATTACTCAAGGATTTTTGTCCCTGAGGGAAAGCCTGTGAAAGCTGAACCCAGAGAGCCTTTGAGGGTTAATGTTCTGTTTAAGCATATACAAGATATGCTGTCTGGCGAAACCGCGGTGATTGCTGAGACAGGGGACTCTTGGTTTAACTGCCAGAAGCTGAAGTTGCCAAAGGGGTGTGGGTATGAGTTCCAAATGCAATATGGTTCAATTGGTTGGTCTGTTGGTGCTACACTTGGTTATGCTCAGGCGGTTCCTGAGAAGCGAGTGATTTCTTGCATTGGTGATGGAAGCTTTCAGGTGACAGCTCAGGATGTGTCCACAATGCTGCGAAATGAGCAGAAGACCATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTGAAATTCATGATGGGCCATACAATGTGATTAAGAACTGGAACTACACTGGCTTGGTTGATGCAATCCACAATGGTGAAGGAAAATGCTGGACCACTAAGGTTACATGTGAAGAGGAGCTTGTTGAGGCAATTCAGACAGCAACAGGTGACAAGAAAGATTGCTTGTGCTTCATTGAAGTGATTGTTCACAAGGATGACACAAGCAAAGAATTGCTTGAATGGGGCTCAAGGGTTTGTGCTGCTAACGGTCGTCCTCCCAATCCTCAGTGA >Glyma01g29190.2 sequence type=CDS gene model=Glyma01g29190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTGCCAGTTTATAGTAGCTGTGGTGAATAACATAGAAGATGCTCATGAATTGATTGATACTGCAATCTCAACCTGCCTGAAAGAAAGCAAGCCTGTGTACATAAGCATAAGTTGTAACTTGCCTGGCATTCCTCACCCCACATTCAGTCGCGAGCCGGTTCCATTTTCTCTGTCTCCAAGATTGAGTAACAAGATGGGGTTGGAGGCTGCAGTGGAAGCAGCAGCAGAGTTCCTAAACAAGGCAGTGAAGCCTGTAATGGTTGGAGGTCCTAAACTAAGGGTGGCTAATGCATGTGATGCATTTGTTGAGCTTGCTGATGCATGTGGCTATCCATTTGCTGTGATGCCATCAGCCAAGGGACTAGTCCCGGAGCACAAACCCCACTTCATTGGCACATTCTGGGGTGCTGTGAGCACCGCATTCTGTGCTGAAATCGTCGAATCTGCTGATGCATACTTGTTTGCTGGCCCCATTTTCAATGACTACAGCTCTGTTGGGTACTCACTCCTCCTCAAGAAGGAGAAGGCCATCATCGTGCAGCCGGAGCGCGTTGTGATCTCCAATGGACCCGCATTCGGGTGTGTCCTCATGAAGGACTTCCTCAGGGAACTCGCAAAGCGTCTCAAGCACAACAACACTGCTTATGAAAATTACTCAAGGATTTTTGTCCCTGAGGGAAAGCCTGTGAAAGCTGAACCCAGAGAGCCTTTGAGGGTTAATGTTCTGTTTAAGCATATACAAGATATGCTGTCTGGCGAAACCGCGGTGATTGCTGAGACAGGGGACTCTTGGTTTAACTGCCAGAAGCTGAAGTTGCCAAAGGGGTGTGGGTATGAGTTCCAAATGCAATATGGTTCAATTGGTTGGTCTGTTGGTGCTACACTTGGTTATGCTCAGGCGGTTCCTGAGAAGCGAGTGATTTCTTGCATTGGTGATGGAAGCTTTCAGGTGACAGCTCAGGATGTGTCCACAATGCTGCGAAATGAGCAGAAGACCATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTGAAATTCATGATGGGCCATACAATGTGATTAAGAACTGGAACTACACTGGCTTGGTTGATGCAATCCACAATGGTGAAGGAAAATGCTGGACCACTAAGGTTACATGTGAAGAGGAGCTTGTTGAGGCAATTCAGACAGCAACAGGTGACAAGAAAGATTGCTTGTGCTTCATTGAAGTGATTGTTCACAAGGATGACACAAGCAAAGAATTGCTTGAATGGGGCTCAAGGGTTTGTGCTGCTAACGGTCGTCCTCCCAATCCTCAGTGA
>Glyma01g29190.1 sequence type=predicted peptide gene model=Glyma01g29190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTNIGSLSLDACKPANNDVGCPPNGAVSAIKPSVPATTMTSSDATLGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAEPQLKNIGCCNELNAGYAADGYARCRGVGACVVTFTVGGLSVINAIAGAYSENLPLICIVGGPNTNDFGTNRILHHTIGLSDFSQELRCFQTVTCYQAVVNNIEDAHELIDTAISTCLKESKPVYISISCNLPGIPHPTFSREPVPFSLSPRLSNKMGLEAAVEAAAEFLNKAVKPVMVGGPKLRVANACDAFVELADACGYPFAVMPSAKGLVPEHKPHFIGTFWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPERVVISNGPAFGCVLMKDFLRELAKRLKHNNTAYENYSRIFVPEGKPVKAEPREPLRVNVLFKHIQDMLSGETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVISCIGDGSFQVTAQDVSTMLRNEQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVTCEEELVEAIQTATGDKKDCLCFIEVIVHKDDTSKELLEWGSRVCAANGRPPNPQ* >Glyma01g29190.2 sequence type=predicted peptide gene model=Glyma01g29190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVCQFIVAVVNNIEDAHELIDTAISTCLKESKPVYISISCNLPGIPHPTFSREPVPFSLSPRLSNKMGLEAAVEAAAEFLNKAVKPVMVGGPKLRVANACDAFVELADACGYPFAVMPSAKGLVPEHKPHFIGTFWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPERVVISNGPAFGCVLMKDFLRELAKRLKHNNTAYENYSRIFVPEGKPVKAEPREPLRVNVLFKHIQDMLSGETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVISCIGDGSFQVTAQDVSTMLRNEQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVTCEEELVEAIQTATGDKKDCLCFIEVIVHKDDTSKELLEWGSRVCAANGRPPNPQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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