SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G01310 | AT | Annotation by Michelle Graham. TAIR10: APRATAXIN-like | chr5:125304-128960 FORWARD LENGTH=912 | SoyBase | E_val: 0 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0047627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenylylsulfatase activity | SoyBase | N/A | ISS |
| KOG2134 | KOG | Polynucleotide kinase 3' phosphatase | JGI | ISS | |
| PTHR12486 | Panther | APRATAXIN-RELATED | JGI | ISS | |
| PTHR12486:SF4 | Panther | gb def: putative protein [arabidopsis thaliana] | JGI | ISS | |
| PF01661 | PFAM | Macro domain | JGI | ISS | |
| PF06414 | PFAM | Zeta toxin | JGI | ISS | |
| PF11969 | PFAM | Scavenger mRNA decapping enzyme C-term binding | JGI | ISS | |
| UniRef100_G7I746 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH140 (Fragment) n=1 Tax=Medicago truncatula RepID=G7I746_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023374E0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023374E0 related cluster n=1 Tax=unknown RepID=UPI00023374E0 | SoyBase | E_val: 0 | ISS |
|
Glyma01g29150 not represented in the dataset |
Glyma01g29150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g117800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g29150.2 sequence type=CDS gene model=Glyma01g29150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATGGACGTGGAAGAAGCTTCTGCACCTAAAGAGAGAAAGCCCGTTTTGGTGATCTTGGTGGGCGCTCCAGGGAGCGGGAAGTCCACCTTCTGCGAAGAAGTTATGGGTTCCTCTACTCGCCCTTGGGTTCGCGTTTGCCAGGACACTATTGGAAATGGTAAAGCAGGAAATAAAGCTCAGTGCCTAAGCAGTGCAACTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGATAGGTGCAATCTTGACAGAGAACAGCGTTCAGAATTTATAAAGCTTGGTGATGGACCCCAAATAGATGTCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTTTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAGCCGGATAACATTTTGTCAGAATGAAAGTGATGTAAAAAATGCTCTTAACACATACAGCACACTTGGGCCACTGGATAGTCTTCAATATGGCTGCTTTGGCCAGAAGAATCCTGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTTAAAAGAGCAGAGGTCCCAGTTGCTGCTGCATCTAGAGAGAGTGGCATTGAAGACCCTACTTCCCAGACTCCGGGTAAAAATAACTCCTGCTGCAAAGATAAGCAAACATTTTCCTCAATTCCTGATAATGACAACTCAGAGACGAAGGAAGTAGAAAACCAAGCAGTTGGCTCTGTTGGTTCCCATGCCAATCAAGTTTCTCTGGATGATATTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTTCAATTCAACCATGAGAAGGCAGCTGATATTATTGTTGAGAAGGTTGCAGAGTTCTCAAATAAGTTTAGGAATGCCAGACTTGTTCTTGTTGACTTGTCTCATAAATCAAAGATTCTGTCCTTAGTTAAGGCTAAAATTGCAGGAAAAAACATTGATGCCCAAAAGTTCTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGTAATGTCATTGCTAACGCTGCCAACTGGAGGTTAAATCCTGGAGGTGGAGGTGTAAATGCAGCAATTTTTAATGCTGCAGGTCCTGAACTGGAGTCTGCAACAAAAGAAAAAGTACAATCTCTTTCTCCAGGGAATGCTGCTGTTGTTCCTCTACCTTCATCTTCTCCTTTGTTCACCAGAGAGGGTGTAACCCATGTAATACATGTTGTTGGACCTAATATGAACCCACAAAGACCAAATTGTCTAAATAATGATTATAATAAAGGCTGCAAAATTCTCCAAGATGCTTATACTTCACTTTTTGAAGGCTTTGCATCTATTGTGAGGAACCAGACATGGCATCCAGTAGGAAAAAGTGAAAACCTTGAAAGGAAGTCTTTAGAGTTGCAGGTTCAGTCTGATTGTTCCAGAAATTATTTCACAAAAACTGATCAAAAGAGTAAGAGAGATGTTGATCATGGATTGGGAAAAAGTAAGAAATACAAGGGGACTCGGGATGACTCTGGATTGACCTTTACTGATTCTAGGAATGAAAATGTTGATTCAGAGCATAGAACTGAGAGGAGCATGACTAAGACATGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCAGAAAAGCTTAAGGATGACTTGCTTGAAATTTCCGATGATGTTGTTGTATTGAATGATATGTATCCCAAGGCACGGAAGCATGTTCTGGTGTTGGCACGAACCGGAGGTCTTGATTGCCTTGCAGATGTCCAAAAGGAGCACCTTCAGTTATTGAACAAGATGCATGATGTGGGTTTAAAGTGGGCTGAGAAGTTCTTGAACGAGAATGCTTCCCTGGTATTTCGTCTCGGATATCACTCGGCACCATCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAATACATTTAAAGAACAAGAAGCACTGGAACTCATTTAACACAGCTTTCTTTCGTGACTCGGTAGATGTAATAGACGAGATCTCTAGTGATGGGAAGGCAAAATTGAAAGATGATGACAAACTACTGTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCACATCCAAACATACCGCGTTTAAAATCACATATTAGCAACTGCCAATCCCCCTTTCCTGCTCACCTGCTTCAACACGGACGTTTGGTGCGTGCACCAGGAGAACCTCATAGCAATGTCCAGTAG
>Glyma01g29150.2 sequence type=predicted peptide gene model=Glyma01g29150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDMDVEEASAPKERKPVLVILVGAPGSGKSTFCEEVMGSSTRPWVRVCQDTIGNGKAGNKAQCLSSATRALKDGKSVFIDRCNLDREQRSEFIKLGDGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQHKELPKLSEGFSRITFCQNESDVKNALNTYSTLGPLDSLQYGCFGQKNPDSKIQVGIMKFLKRAEVPVAAASRESGIEDPTSQTPGKNNSCCKDKQTFSSIPDNDNSETKEVENQAVGSVGSHANQVSLDDIPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKAKIAGKNIDAQKFFTHVGDITHLYSRGGLRCNVIANAANWRLNPGGGGVNAAIFNAAGPELESATKEKVQSLSPGNAAVVPLPSSSPLFTREGVTHVIHVVGPNMNPQRPNCLNNDYNKGCKILQDAYTSLFEGFASIVRNQTWHPVGKSENLERKSLELQVQSDCSRNYFTKTDQKSKRDVDHGLGKSKKYKGTRDDSGLTFTDSRNENVDSEHRTERSMTKTWGSWAQALHQIAMHPEKLKDDLLEISDDVVVLNDMYPKARKHVLVLARTGGLDCLADVQKEHLQLLNKMHDVGLKWAEKFLNENASLVFRLGYHSAPSMRQLHLHVISQDFESIHLKNKKHWNSFNTAFFRDSVDVIDEISSDGKAKLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISNCQSPFPAHLLQHGRLVRAPGEPHSNVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
