Glyma01g27470 - SoyBase

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Report for Sequence Feature Glyma01g27470

Feature Type:	gene_model
Chromosome:	Gm01
Start:	36735449
stop:	36737186
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g27470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48520	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 94, subfamily B, polypeptide 3 \| chr3:17975104-17976624 REVERSE LENGTH=506	SoyBase	E_val: 0	ISS
GO:0002213	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to insect	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009694	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010154	GO-bp	Annotation by Michelle Graham. GO Biological Process: fruit development	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0048480	GO-bp	Annotation by Michelle Graham. GO Biological Process: stigma development	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0052694	GO-mf	Annotation by Michelle Graham. GO Molecular Function: jasmonoyl-isoleucine-12-hydroxylase activity	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24296	Panther	FAMILY NOT NAMED	JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_G7J7B8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 94A1 n=1 Tax=Medicago truncatula RepID=G7J7B8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J779	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J779_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g27470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g27470 not represented in the dataset	Glyma01g27470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g27470

Paralog	Evidence	Comments
Glyma03g14500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g27470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g112400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g27470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g27470

Limit To All Plant Sequences

>Glyma01g27470.1   sequence type=CDS   gene model=Glyma01g27470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGTTTGGGATCACCTACATTTCAAAATATAACCGCACCGTCCAGCAGCTACATCGAATGGAAGTATAAAAGTCATAATAACAACCATGCACCTCTCTCACACCCGATCATTGGATGCCTCGTCTCCTTCTACCAAAACCGCCACCGTCTCCTCGATTGGTACACCGAACAGTTAGCCAATTCCCCGACACAGACCATAGTCGTGCGCCGCCTCGGCGCACGACGCACGGTGGTGACGGCGAACCCCCGCAACGTGGAGTACATTCTAAAGACCAACTTCGGAAACTTCCCCAAAGGCAAACCCTTCACCGAAATCCTCGGCGACTTTCTCGGGTGCGGCATATTCAACGTGGACGGCGAGCTGTGGCACACCCAGCGCAAGTTAGCGAGTAACGCGTTCAGCACGCGCTCCCTCAAGGACTTCATCGTGAAGACACTTCAAGAGGAGGTTCAACAAAGGCTTGTTCCATTACTTGAGCACGCCGCACGTGAGAATCACGTGATCGATCTGCAAGACGTGTTGAGTAGGCTGACGTTCGATACTGTGTGTAAGGTGTCGCTGGGCTACGACCCGTGCTGTTTGGACCTCTCGAAGCCGCTGCCGCCTCTTTTGACGGCGTTCGATACCGCGTCGGAGGTCAGCGCCGCCCGCGGCTCTGCCCCGGTGTTTCTGGTGTGGAAGATGAAGAGAATGCTCAACGTTGGATCAGAGAAAGCATTGAAGGAAGCAGTGAAGCTAGTGCACGAGTCCGTGATGAATATTATAAAATTGAAGAAGGAGGAAATTAGGTTCAATAGAAAAAACGGCACGGATTTGCTTGATCGTTTGTTGGAGGCGTGTCACGAGGAAATTGTGGTGAGGGATATGGTTATAAGCATGATAATGGCGGGGAGGGACACCACTTCGGCCGCGATGACGTGGCTGTTTTGGTTGTTATCAAGACATAGGGAGCAAGAAGCATCGTTAGTGAAAGAGGTTTATGATGAAAATAACCAAAATCAGGGTTTGGGTTTGGATTATGAGTGTTTGAAGGAAATGAAGTTGTTGAAGGCATGTTTGTGTGAGTCCATGAGATTGTACCCACCAGTGGCATGGGACTCGAAGCATGCTGGTGGTGCTGACGTGTTACCCGATGGGACCCACGTGGAGAAAGGGGATAGGGTAACCTATTTTCCCTATGGAATGGGGAGAATGGAGGCTCTGTGGGGGGAGAATTGTTGTGAGTTTAAGCCACAACGTTGGTTTCATGAGGAGAATGTTGATAATGGGATTTTAAAGTGTGTGAATCCTTATATGTTTCCGGTGTTTCAGGCTGGGCCAAGAGTGTGTCTTGGGAGGGAAATGGCTTTTATTCAGATGAAGTATGTGGTGGCTTCTATTCTCAACCGCTTTGTGATTTCGCCTGTTTCTGATGAGCAACCTCGTTTTGTTCCTCTTCTAACGGCTCATATGGCCGGAGGGTTCATAGTGAGGGTCCACAAGAGAAATGGAACTGAAATTGAGAAGTAA

Predicted protein sequences of Glyma01g27470

Limit To All Plant Sequences

>Glyma01g27470.1   sequence type=predicted peptide   gene model=Glyma01g27470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGLGSPTFQNITAPSSSYIEWKYKSHNNNHAPLSHPIIGCLVSFYQNRHRLLDWYTEQLANSPTQTIVVRRLGARRTVVTANPRNVEYILKTNFGNFPKGKPFTEILGDFLGCGIFNVDGELWHTQRKLASNAFSTRSLKDFIVKTLQEEVQQRLVPLLEHAARENHVIDLQDVLSRLTFDTVCKVSLGYDPCCLDLSKPLPPLLTAFDTASEVSAARGSAPVFLVWKMKRMLNVGSEKALKEAVKLVHESVMNIIKLKKEEIRFNRKNGTDLLDRLLEACHEEIVVRDMVISMIMAGRDTTSAAMTWLFWLLSRHREQEASLVKEVYDENNQNQGLGLDYECLKEMKLLKACLCESMRLYPPVAWDSKHAGGADVLPDGTHVEKGDRVTYFPYGMGRMEALWGENCCEFKPQRWFHEENVDNGILKCVNPYMFPVFQAGPRVCLGREMAFIQMKYVVASILNRFVISPVSDEQPRFVPLLTAHMAGGFIVRVHKRNGTEIEK*

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