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Report for Sequence Feature Glyma01g27455

Feature Type:gene_model
Chromosome:Gm01
Start:36705022
stop:36712560
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g27455
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G36930AT Annotation by Michelle Graham. TAIR10: Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191 SoyBaseE_val: 0ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
KOG4658 KOG Apoptotic ATPase JGI ISS
PTHR11017Panther LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR11017:SF130Panther DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PU JGI ISS
PF00931PFAM NB-ARC domain JGI ISS
PF01582PFAM TIR domain JGI ISS
UniRef100_G7JLX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: TIR-NBS-LRR RCT1-like resistance protein n=1 Tax=Medicago truncatula RepID=G7JLX5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1J778UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J778_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g27455
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g27455 not represented in the dataset
Glyma01g27455 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g27455
ParalogEvidenceComments
Glyma03g14615 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g27455 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g112300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g27455
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g27455
>Glyma01g27455.1   sequence type=CDS   gene model=Glyma01g27455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGCCTAACCGATAGAACAGAATTGCATCACAGTGGGGAAATGAGAGACGGACAAAGCAGCATCATCACCCAACTAGCCCTGACGCCGGAAACCGCGAGCGTTCTCAAGGAATCAATCGCAATGGCCCGCGAGAAGAAACACCTTCATACCACTCCGCTCCATGTGGTGGCCAAGCTTCTCGATTCCCCATCGGGATTCCTGCACCAAGCCTGCATGAAATCGCAACCGACATCTTACCCACTTCAGTACCAGGGGCTGGAGCTATGCTTAAATGTGGCCATGAACCGATTGCCTATGAGCATTTCTTCCATGGAGCCACTAATCTCCAATTCCTTGAAGGCTGCCTTCAAGCGAATCCGTGCCCAGCAGCATGGCAGGCAGCCTCCATCCACGGACAAAGTCGAACTCGAACAGTTAATCTTATCCATTTTGGACGACCCCAGCGTGAGCAAGGTCATGAAGGCAGCCGGTTACTCAAGCCCCGACATTAGCGCCACCTTCCAGCGGGGGCGCAAGTATGAAGTGTTTATTAGTTTCAGAGGGGAAGACACGCGTTCTTCTTTCACTTCTCATCTCTATGCCGCTCTTCAGAATGCCGGAATCATTGTTTTCAAGGATGACGAGTCACTTCCAAGGGGACATCACATTTCAGACTCACTGCTTCTCGCTATCGAACAGTCTCAGATTTCTGTTGTTGTTTTCTCAAGAAATTATGCAGATTCCCGATGGTGTTTAAAAGAGTTGGAGAGAATAATGGAGTGCCACAGAACCATAGGGCATGTGGTAGTGCCTGTGTTCTATGATGTTGATCCCTCTGAAGTACGTCATCAAACTAGCCACTTTGGAAATGCATTTCAAAACCTTTTAAACAGAATGTCCATAGACTTAAATTCCAGTGGAGAAATGGAGATGATGCTTAATAATGAGACAAACCTCCACGGAAAGAGTTGGAGGGAGGCACTTCGTGAGGCTGCTAGCATCTCAGGGGTTGTAGTCCTCGATTCCAGGAATGAAAGTGAGGCTATTAAAAATATTGTTGAAAATGTTACACGTTTGTTAGACAAGACAGAGTTATTCATTGCTGATAATCCAGTGGGAGTAGAATCTCGAGTACAAGATATGATTCAACTGCTAGACCAAAAACTTTCAAACGATGTTGAACTATTAGGGATATGGGGAATGGGAGGCATTGGTAAAACAACCATTGCAAAAGCCATTTTCAATAAGATTGGCCGCAACTTTGAGGGAAGGAGCTTCCTTGCACAGATTAGGGAAGCTTGGGAGCAAGATGCTGGCCAAGTCCATTTACAAGAACAACTCCTATTTGATATTGACAAAGAATCGAAAACAAAGATACCTAACATTGAATTAGGAAAAAACATATTGAAGGAAAGACTTCGCCATAAGAAGGTACTTCTTATACTTGATGATGTCAATAAATTGCACCAGTTGAATGCTTTGTGTGGAAATCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGATATGCATATACTTAGAGGGAGAAGAGTTGACAAAGTGTACACTATGAAAGAAATGAATGAAGATGAATCTATTGAGCTTTTTAGCTGGCATGCATTCAAGCAACCAAGTCCTAGAGAAGATTTTACCGAACTTTCTAGAAATGTAATTGCTTATTCTGGGGGATTGCCACTAGCTCTTGAAGTCCTTGGTTCCTATTTGTTTGATATGGAGGTAACAGAGTGGAAGTGTGTTTTGGAGAAACTTAAGAAAATTCCTAATGATGAAGTACAGGAGAAGTTAAAAATAAGCTTTGATGGTTTAAATGATGATACTGAGCGGGAAATATTTCTCGATATAGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATCCATATACTAAATGGAAGTGAACTTTATGCTGAAAATGGAATACGTGTCCTTGTAGAGCGAAGTCTTGTTACTGTTGATAAAAAGAACAAGCTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAAATCATCCGTGTGAAATCACCAAAGGAACCTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTGCTTGATGTATTATTAAAAGAAAGTGGAACAAAAGCTGTTGAGGGATTGACTTTGATGCTTCCACGGAGTAATACAAAATGTTTGAGTACTACATCTTTCAAGAAGATGAAGAAACTCAGGTTACTTCAATTTGCTGGTGTTGAACTTGCTGGAGATTTTAAGAATCTTTCAAGAGATTTGAGATGGCTATATTGGGATGGATTTCCTTTCAAATGCATACCAGCAGACCTTTATCAAGGAAGTTTAGTTTCCATTGAGTTAGAAAATAGCAATATCAGCCATATGTGGAAAGAGGCCCTGTTGATGGAAAAGCTGAAAATTCTGAATCTCAGTCATTCTCATTATTTGACACAGACCCCAGACTTTTCAAACTTACCATATCTTGAAAAGCTAATACTCATAGATTGTCCAAGACTATTTGAGGTTTCTCATACCATTGGACATCTCAGGGATATCGTGCTGATAAATTTGGAAGACTGTGTTAGCCTTCGTAACCTTCCAAGAAGCATTTATAATTTGAAATCTCTGAAAACTCTTATTCTTTCTGGATGTTTAATGATTGACAAGTTGGAAGAAGACTTGGAACAGATGAAATCTTTGACAACACTGATTGCGGATAGGACAGCAATAACAAGAGTGCCTTTTTCAGTAGTACGGTCAAATAGCATTGGATATATTTCTCTATGTGGCTATGAAGGATTCTCACGTGATGTATTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAAATAATCCTTTATGCCTAGTCGAGTCTTACGCGGGTATGTCATCTCTTGTTTCTTTTAATGTGCCAAATAGTAGTAGTTCCCACGATCTTCTAACTATTTCCAAAGAACTGCCAAAGCTTAGAAGTCTTTGGGTGGAATGCAACTCCAAACTTCAACTATCTCAAGATACAAGAATAATTTTGGATGCTTTACATGCTGACACAAATTTTGAGGAAAAAGAATCAAGTACCACAACTACATCACATGGCCCAAACACAAAAACTTCTGCATTAATTGAATGTAGCAATCAAGAGCACATTTCTGGATCAAAAAGTTCTTTGAAATCTCTTCTAATTCAAATGGGAACGAATTGCCAAGGCTCCAATATTCTAAAAGAAAACATTTTACAGAATATGACTACAAGTGGGTGTGACAGTGGTTTGTACCCAGGTGACAATTATCCTGATTGGTTAACCTTCAATTGTGATGGTTCTTCTGTAATTTTTGATGTCCCTCAAGTGAATGGGTATAACTTGAAGACAATGATGTTCATTATCCACTCTTTTACCCCTGACAACATAACATCAGATGGCCTTAAAAATGTGTTGGTGATAAATCACACAAAGTTCACCATTCAGCTTTATAAGAGAGGCACATTAGTATCCTTCGAAGATGAAGAATGGCAGAGAGCAGTATCAAATATAGAACCTGGTAACAAAGTGGAGGTTGCTGTTGTTTTTGAGAATGGGTTCACTGTGAAGAAGACAACAGTTTATCTCATTTATGATGAACCAAATCCAAATGACAAGAAATTAGAGTATTGCCATGCATCTGATAAGAATGTTGTTGTTTCCGGTCGCGATGAAAATGTATCTGTTGTTGGGTGGATTTCTCCTCAAGTGGAATCCACCAATGACTTTAAACAAAAACAGAAAAGAAGAAAATTTGAATGA
Predicted protein sequences of Glyma01g27455
>Glyma01g27455.1   sequence type=predicted peptide   gene model=Glyma01g27455   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESLTDRTELHHSGEMRDGQSSIITQLALTPETASVLKESIAMAREKKHLHTTPLHVVAKLLDSPSGFLHQACMKSQPTSYPLQYQGLELCLNVAMNRLPMSISSMEPLISNSLKAAFKRIRAQQHGRQPPSTDKVELEQLILSILDDPSVSKVMKAAGYSSPDISATFQRGRKYEVFISFRGEDTRSSFTSHLYAALQNAGIIVFKDDESLPRGHHISDSLLLAIEQSQISVVVFSRNYADSRWCLKELERIMECHRTIGHVVVPVFYDVDPSEVRHQTSHFGNAFQNLLNRMSIDLNSSGEMEMMLNNETNLHGKSWREALREAASISGVVVLDSRNESEAIKNIVENVTRLLDKTELFIADNPVGVESRVQDMIQLLDQKLSNDVELLGIWGMGGIGKTTIAKAIFNKIGRNFEGRSFLAQIREAWEQDAGQVHLQEQLLFDIDKESKTKIPNIELGKNILKERLRHKKVLLILDDVNKLHQLNALCGNREWFGSGSRIIITTRDMHILRGRRVDKVYTMKEMNEDESIELFSWHAFKQPSPREDFTELSRNVIAYSGGLPLALEVLGSYLFDMEVTEWKCVLEKLKKIPNDEVQEKLKISFDGLNDDTEREIFLDIACFFIGMDRNDVIHILNGSELYAENGIRVLVERSLVTVDKKNKLGMHDLLRDMGREIIRVKSPKEPEERSRLWFHEDVLDVLLKESGTKAVEGLTLMLPRSNTKCLSTTSFKKMKKLRLLQFAGVELAGDFKNLSRDLRWLYWDGFPFKCIPADLYQGSLVSIELENSNISHMWKEALLMEKLKILNLSHSHYLTQTPDFSNLPYLEKLILIDCPRLFEVSHTIGHLRDIVLINLEDCVSLRNLPRSIYNLKSLKTLILSGCLMIDKLEEDLEQMKSLTTLIADRTAITRVPFSVVRSNSIGYISLCGYEGFSRDVFPSIIWSWMSPTNNPLCLVESYAGMSSLVSFNVPNSSSSHDLLTISKELPKLRSLWVECNSKLQLSQDTRIILDALHADTNFEEKESSTTTTSHGPNTKTSALIECSNQEHISGSKSSLKSLLIQMGTNCQGSNILKENILQNMTTSGCDSGLYPGDNYPDWLTFNCDGSSVIFDVPQVNGYNLKTMMFIIHSFTPDNITSDGLKNVLVINHTKFTIQLYKRGTLVSFEDEEWQRAVSNIEPGNKVEVAVVFENGFTVKKTTVYLIYDEPNPNDKKLEYCHASDKNVVVSGRDENVSVVGWISPQVESTNDFKQKQKRRKFE*






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