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Report for Sequence Feature Glyma01g27280

Feature Type:gene_model
Chromosome:Gm01
Start:36438460
stop:36440199
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g27280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09085AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF962) | chr3:2782238-2782576 FORWARD LENGTH=112 SoyBaseE_val: 4.00E-48ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06127PFAM Protein of unknown function (DUF962) JGI ISS
UniRef100_F5SJT0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Desmospora sp. 8437 RepID=F5SJT0_9BACL SoyBaseE_val: 8.00E-30ISS
UniRef100_I1J772UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J772_SOYBN SoyBaseE_val: 1.00E-75ISS

Expression Patterns of Glyma01g27280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g27280
ParalogEvidenceComments
Glyma03g14670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g27280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g111500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g27280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g27280
>Glyma01g27280.1   sequence type=CDS   gene model=Glyma01g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTCAGGAGCCTGGAAGATTTCTGGGCCTTTTACATGAACCAACACTCCAAGGCTTCCACAAGGCGCTGGCACTTCGCGGGAACACTCTTCAGCATTCTCTTATTCTTCTGCTCTCTCTTGTTCAGTTGGTGGTTCTTGCTCCTTGTCCCTTTCTCTGGGTATGGATGTGCCTTTTATAGCCACTTGTTTGTAGAGAGGAATTTCCCTGAGGATTTGAGACACCCCTTTTGGTCCCTCTTGTGTGACTTCAAGATGTTCGGGTTCATGCTTACTGGCAACATGGATAGGGAGATCAAAAGGCTCGGGAAGAGACCTGTGCTGCAAGTGTTTTGA
Predicted protein sequences of Glyma01g27280
>Glyma01g27280.1   sequence type=predicted peptide   gene model=Glyma01g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFRSLEDFWAFYMNQHSKASTRRWHFAGTLFSILLFFCSLLFSWWFLLLVPFSGYGCAFYSHLFVERNFPEDLRHPFWSLLCDFKMFGFMLTGNMDREIKRLGKRPVLQVF*






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