Glyma01g27260 - SoyBase

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Report for Sequence Feature Glyma01g27260

Feature Type:	gene_model
Chromosome:	Gm01
Start:	36388729
stop:	36391729
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g27260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05610	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily \| chr3:1625876-1627976 REVERSE LENGTH=669	SoyBase	E_val: 0	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_I1J771	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=2 Tax=Glycine max RepID=I1J771_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1J771	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=2 Tax=Glycine max RepID=I1J771_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g27260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g27260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g111400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g27260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g27260

Limit To All Plant Sequences

>Glyma01g27260.1   sequence type=CDS   gene model=Glyma01g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAGGGAAATGCGGAGAGAGGAAAGAGAATTGCCATTATTGGTGTCTCAACCTTATTGTTGGTGGCGATGGTTGTGGCTGTCACAGTTGGTGTCAATGTTAGTGAGAATGGTTCCAACAATGAGGACACAAAAATTGCTTCTTCTGTAAAAGCCGTCCAAACCCTTTGCCATCCCACAAATTATAAGAAAGAATGTGAGGAAAGCCTCATAGCCAGGGCTGGAAATACCACTGATCCAAAAGAACTTATCAAAATTGTCTTCAACATCACCATTACAAAAATTGGCGATAAACTCAAAAAAACTAATCTTTTGCATGAGGTTGAGGAGGATCCCAGAGCCAAGATGGCACTTGACACATGCAAGCAACTCATGGATCTTTCTATTGAGGAGTTAACAAGGTCACTTGATGGAATAGGTGAGTTTGACCTGAAAAATATCGACAAAATCCTCATGAATTTAAAAGTTTGGCTTAGTGGTGCAGTTACATACCAAGATACTTGCTTGGATGGGTTTGAGAACACCACTAGTGACGCTGGTAAAAAGATGAAGGATTTGTTGACGGCAGGCATGCATATGAGCAGCAATGCCCTTGCCATTGTAACGAATTTGGCTGACACTGTTGATGATTGGAATGTCACAGAATTATCTAGGCGTCGCCTCCTTCAAGATTCTAAGCTTCCCGTGTGGGTTGATCAACATAGACTCCTTAATGAAAATGAAAGTCTATTAAGACACAAGCCTAATGTTACTGTAGCCATTGATGGTAGTGGGGATTTCGAAAGCATCAATGAGGCATTGAAGCAAGTGCCTAAGGAAAACCGAAAGCCATTTGTGATCTACATCAAGGAAGGCGTTTACCAAGAGTATGTTGAGGTTACAAAGAAAATGACCCATGTGGTGTTTATTGGTGAAGGTGGAAAAAAGACACGAATAACTGGTAACAAAAACTTCATAGATGGAACAAACACTTACAGAACTGCCACTGTTGCTATTCAAGGAGATTACTTTGTGGCCATCAATATGGGGTTTGAGAATTCTGCTGGACCACAAAAGCATCAAGCAGTAGCATTAAGAGTCCAAGCAGATAAGTCCATTTTCTACAATTGCTCAATGGATGGGTATCAGGACACTCTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACGATTTCAGGTACCATTGACTTTGTGTTTGGTAATGCACTTGCTATTTTCCAAAATTGCACTTTCGTGGTCCGAAAGCCATTGGAGAACCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGATACAACAACCATCTGGAATAGTAATCCAAGGGGGATCCATTGTGTCTGATCCTGAGTTCTACTCTGTGAGATTTGAGAACAAGGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGGACCATCATCATGGACACTTACATTGATGATTTGATTAATGTTGATGGGTATTTGCCATGGCAAGGACTAGAGGGTCCTTCTGGTATGAATACTTGCTTCTATGCCGAGTACCACGACAGTGGCCCGGGTTCAGACAAATCTAAACGTGTGAAATGGGCTGGGATTTGGAATCTCAATTCAAAAGCTGCACGTTGGTTCTCAGCATCTAAGTTTTTTCACGGAACTGACTGGATTGAAGTTACTGGGATTCCTTGCTTTCGTGACATTCCCGCACACCATAGGCACAAAAAGACAAGGCTTAATTGGTAA

Predicted protein sequences of Glyma01g27260

Limit To All Plant Sequences

>Glyma01g27260.1   sequence type=predicted peptide   gene model=Glyma01g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEGNAERGKRIAIIGVSTLLLVAMVVAVTVGVNVSENGSNNEDTKIASSVKAVQTLCHPTNYKKECEESLIARAGNTTDPKELIKIVFNITITKIGDKLKKTNLLHEVEEDPRAKMALDTCKQLMDLSIEELTRSLDGIGEFDLKNIDKILMNLKVWLSGAVTYQDTCLDGFENTTSDAGKKMKDLLTAGMHMSSNALAIVTNLADTVDDWNVTELSRRRLLQDSKLPVWVDQHRLLNENESLLRHKPNVTVAIDGSGDFESINEALKQVPKENRKPFVIYIKEGVYQEYVEVTKKMTHVVFIGEGGKKTRITGNKNFIDGTNTYRTATVAIQGDYFVAINMGFENSAGPQKHQAVALRVQADKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAIFQNCTFVVRKPLENQQCIVTAQGRKEIQQPSGIVIQGGSIVSDPEFYSVRFENKAYLARPWKNYSRTIIMDTYIDDLINVDGYLPWQGLEGPSGMNTCFYAEYHDSGPGSDKSKRVKWAGIWNLNSKAARWFSASKFFHGTDWIEVTGIPCFRDIPAHHRHKKTRLNW*

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