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Report for Sequence Feature Glyma01g27230

Feature Type:gene_model
Chromosome:Gm01
Start:36326564
stop:36327062
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g27230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24550AT Annotation by Michelle Graham. TAIR10: Clathrin adaptor complexes medium subunit family protein | chr4:12675873-12678689 FORWARD LENGTH=385 SoyBaseE_val: 5.00E-22ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0030125GO-cc Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat SoyBaseN/AISS
PTHR11998Panther CLATHRIN COAT ASSEMBLY PROTEIN JGI ISS
PTHR11998:SF13Panther CLATHRIN COAT ASSEMBLY PROTEIN AP50 JGI ISS
UniRef100_B9RJW2UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP-4 complex subunit mu-1, putative n=1 Tax=Ricinus communis RepID=B9RJW2_RICCO SoyBaseE_val: 2.00E-20ISS
UniRef100_I1JT85UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT85_SOYBN SoyBaseE_val: 5.00E-24ISS

Expression Patterns of Glyma01g27230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g27230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma01g27230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g27230
>Glyma01g27230.1   sequence type=CDS   gene model=Glyma01g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTTGGTTATGTGCAAACAACATCCACTGAGGATTTGAAGTCATATGTTTATTCAGTTACTTGCTTCAGGCATATTATTGGTTGTACAACTATTACAAAGTCTGTGGTTGCTAATGAACCCGGTGGAAGGAAGAGGGATGAGATCTTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAACTCTAGTGGATTTATACTTACT
Predicted protein sequences of Glyma01g27230
>Glyma01g27230.1   sequence type=predicted peptide   gene model=Glyma01g27230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
DFGYVQTTSTEDLKSYVYSVTCFRHIIGCTTITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILT






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