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Report for Sequence Feature Glyma01g27130

Feature Type:gene_model
Chromosome:Gm01
Start:36161871
stop:36165133
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g27130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54120AT Annotation by Michelle Graham. TAIR10: Reticulon family protein | chr3:20041269-20042133 REVERSE LENGTH=203 SoyBaseE_val: 3.00E-61ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1792 KOG Reticulon JGI ISS
PTHR10994Panther RETICULON/NOGO JGI ISS
PTHR10994:SF27Panther RETICULON-RELATED (PLANT) JGI ISS
PF02453PFAM Reticulon JGI ISS
UniRef100_G7JLU2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Reticulon-like protein B12 n=1 Tax=Medicago truncatula RepID=G7JLU2_MEDTR SoyBaseE_val: 2.00E-101ISS
UniRef100_I1J763UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J763_SOYBN SoyBaseE_val: 2.33E-156ISS

Expression Patterns of Glyma01g27130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g27130
ParalogEvidenceComments
Glyma03g14770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g27130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g110500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g27130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g27130
>Glyma01g27130.1   sequence type=CDS   gene model=Glyma01g27130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCTTTGATCGATTGTTTAACCGCCAAAGAGGTCTTCATGAGATCCTTGGTGGTGGTCAAGTTGCAGATTTAATTCTGTGGAGGCGTAAGAACCTTACTGTGGGGATATTGTTGGTCACACTAGGTGTTTGGGTTGTGTTTGAGAGATCTGGTTATACTCTTCTGTCTCTTATTTCTAATGTTCTCCTTCTCCTCATTGTCATTCTCTTTCTTTGGGCCAAATCAGCAGATATTCTCAACAGACCTGCTCCACCTCTACCACAGCTGCGTCTCTCAGAGGAAATGGCAAATGAAGCGAAGACTTTTATCTGCACAAGAGTTAATGATCTGTTGTCAGTTTCTCAAGATATTGCTCTCGGAAAAGACTCGAGGCTGTTTCTCAAAGTAGCTGCATACCTCTGGTTAATTTCTATTATTGGTGGCTTAACTGATTTCCTTACCCTGGCATACACCAGTCTTCTTTTGGTTCTTACAGTACCAGCAATCTATGAAAGATATGAAGATTACATAGATATGTATATCTTGAAGGGTTACAGAAAATTATGCCTATTGCATGTTAAAATAAATGAGGGATATGTCAGCAAAGTCCACAACTGGATTCTGGAGAAGAAAAAGCTAAGCTGA
Predicted protein sequences of Glyma01g27130
>Glyma01g27130.1   sequence type=predicted peptide   gene model=Glyma01g27130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSFDRLFNRQRGLHEILGGGQVADLILWRRKNLTVGILLVTLGVWVVFERSGYTLLSLISNVLLLLIVILFLWAKSADILNRPAPPLPQLRLSEEMANEAKTFICTRVNDLLSVSQDIALGKDSRLFLKVAAYLWLISIIGGLTDFLTLAYTSLLLVLTVPAIYERYEDYIDMYILKGYRKLCLLHVKINEGYVSKVHNWILEKKKLS*






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