Glyma01g27120 - SoyBase

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Report for Sequence Feature Glyma01g27120

Feature Type:	gene_model
Chromosome:	Gm01
Start:	36147155
stop:	36151735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g27120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54110	AT	Annotation by Michelle Graham. TAIR10: plant uncoupling mitochondrial protein 1 \| chr3:20038890-20040996 FORWARD LENGTH=306	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031966	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane	SoyBase	N/A	ISS
GO:0017077	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidative phosphorylation uncoupler activity	SoyBase	N/A	ISS
KOG0753	KOG	Mitochondrial fatty acid anion carrier protein/Uncoupling protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF28	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_C6T891	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T891_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JR69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial uncoupling protein n=2 Tax=Medicago truncatula RepID=G7JR69_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g27120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g27120 not represented in the dataset	Glyma01g27120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g27120

Paralog	Evidence	Comments
Glyma03g14780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g27120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g110400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g27120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g27120

Limit To All Plant Sequences

>Glyma01g27120.3   sequence type=transcript   gene model=Glyma01g27120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCATTCCCACTCCTCCTAACCTTTAATCCAAATACATTATGCAGATCCAGCTGTTACACATTTGAACTTTGGTAGCACAAAAGAATTACTTACATACGTGAAAAATTGAATACTCTTCCAAATTATCTTGTATGCGAAACATCTTTTGCATTATTGGAGGTTTACATGGCAACAGTATTCTTCACGTGTGTACTATTCCTTTGGACACTGCCAAAGTTAGGCTTCAGCTTCAAAAGCAAGCTGCAACTGGTGATGTAGTCTCCTTACCTAAATATAAGGGTATGCTGGGAACAGTTGCAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGCATTGTGCCAGGGTTACATCGTCAATGTTTGTATGGAGGCTTAAGAATTGGGTTATATGACCCTGTTAAGACTTTCTATGTGGGGAAAGACCATGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGGTGCTTTTGCAATTGCAGTGGCAAATCCAACTGATCTTGTCAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAATGGTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAACAGACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGAGAATTTTCTATGGGGACTGGTTGCAATTGCAAATGCAGTGGAAAATTGTTGAAATAAAGGTCCCTTTCTCTTCATTCTGCCAACCAGGATGTGGTCAAACATTTTTTTAGGGAGGAAAAAATTGGATAGTAAAATGATAATATGTTATTCATATATACTAGCTTTTAGCAATTGCCATATATTCTGTGGGATTGCATGCAGTTTTCATATGATTCTCTTTAAACTTTATTATGAACCGAGCTTGGACATGCCATGCGATTTTCAAATTTGGTGGGGGTTCAAACCTCAAAACCAATGTTTTATTCATTCATAAGTTTAAACACAGCATAGCCCTTGATCAAGACCAATTGTCTTATAATGGTGGCTATTATAGTTGTATCAAAATTCACGCAATTGATGCATCATCCCTTGTTGACTGTTTGCAAGGCAATATATTAGAGCAACTTTAATT

Coding sequences of Glyma01g27120

Limit To All Plant Sequences

>Glyma01g27120.2   sequence type=CDS   gene model=Glyma01g27120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAGATTCTAAGTCCAAATCCGACCTCTCTTTCGGCAAAACCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGGTGTGTACTATTCCTTTGGACACTGCCAAAGTTAGGCTTCAGCTTCAAAAGCAAGCTGCAACTGGTGATGTAGTCTCCTTACCTAAATATAAGGGTATGCTGGGAACAGTTGCAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGCATTGTGCCAGGGTTACATCGTCAATGTTTGTATGGAGGCTTAAGAATTGGGTTATATGACCCTGTTAAGACTTTCTATGTGGGGAAAGACCATGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGGTGCTTTTGCAATTGCAGTGGCAAATCCAACTGATCTTGTCAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAATGGTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAACAGACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGA

>Glyma01g27120.3   sequence type=CDS   gene model=Glyma01g27120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAACATCTTTTGCATTATTGGAGGTTTACATGGCAACAGTATTCTTCACGTGTGTACTATTCCTTTGGACACTGCCAAAGTTAGGCTTCAGCTTCAAAAGCAAGCTGCAACTGGTGATGTAGTCTCCTTACCTAAATATAAGGGTATGCTGGGAACAGTTGCAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGCATTGTGCCAGGGTTACATCGTCAATGTTTGTATGGAGGCTTAAGAATTGGGTTATATGACCCTGTTAAGACTTTCTATGTGGGGAAAGACCATGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTTACAACTGGTGCTTTTGCAATTGCAGTGGCAAATCCAACTGATCTTGTCAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAATGGTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAACAGACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGA

Predicted protein sequences of Glyma01g27120

Limit To All Plant Sequences

>Glyma01g27120.2   sequence type=predicted peptide   gene model=Glyma01g27120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVADSKSKSDLSFGKTFASSAFSACFAEVCTIPLDTAKVRLQLQKQAATGDVVSLPKYKGMLGTVATIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYDPVKTFYVGKDHVGDVPLSKKILAAFTTGAFAIAVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGVGALWTGLGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCIGSPVDVVKSRMMGDSSYRNTLDCFIKTLKNDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQTKRFVKSLELS*

>Glyma01g27120.3   sequence type=predicted peptide   gene model=Glyma01g27120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRNIFCIIGGLHGNSILHVCTIPLDTAKVRLQLQKQAATGDVVSLPKYKGMLGTVATIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYDPVKTFYVGKDHVGDVPLSKKILAAFTTGAFAIAVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGVGALWTGLGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCIGSPVDVVKSRMMGDSSYRNTLDCFIKTLKNDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQTKRFVKSLELS*

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