Glyma01g27110 - SoyBase

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Report for Sequence Feature Glyma01g27110

Feature Type:	gene_model
Chromosome:	Gm01
Start:	36127734
stop:	36131641
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g27110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11320	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-sugar transporter family protein \| chr3:3547017-3548539 REVERSE LENGTH=308	SoyBase	E_val: 5.00E-166	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008514	GO-mf	Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1441	KOG	Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter	JGI		ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_G7JR70	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Solute carrier family 35 member E4 n=1 Tax=Medicago truncatula RepID=G7JR70_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JLT3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLT3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g27110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g27110

Paralog	Evidence	Comments
Glyma03g14790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g27110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g110300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g27110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g27110

Limit To All Plant Sequences

>Glyma01g27110.1   sequence type=CDS   gene model=Glyma01g27110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGACGATGAACAATATTGTTATTATTCCGTGGTCAACCATTGGCGTTGTGATTGCGTGGTACAGTTCCAACATAGGGGTCCTCCTTCTGAACAAGTACTTGCTCAGCAACTACGGCTTCAGGTTCCCCGTTTTCCTCACCACGTGTCACATGATGGTGTGCTCGCTCTTCAGCTACGTTATTGTTTCCGTTACGGACGCAGTTCCGCTGCAGCGCGTGCGGTCCAGGAGCCAGTTCGGGAGGATCGTGGCGCTCGGTGTCGTTTTCTGCTTCTCCGTCGTCTGCGGGAACGTGTCGCTCAGGTACATTCCTGTGTCGTTTAACCAGGCCATCGGAGCCACCACGCCGTTCTTCACCGCCGTTTTCGCTTACGCCGTGAGCGCCAAGAGGGAGGCGTGGGTTACTTACGCCACGCTCTTGCCCGTTGTTGCGGGCGTCGTCGTAGCTAGTGGGGGTGAACCAAGTTTCCATCTGTTTGGATTTGTAATCTGTGTTTCATCGACAGCTGCCAGAGCATTTAAATCAGTCCTTCAAGATATTTTGTTGTCCTCAGAGGGAGAAAAGTTGAATTCTATGAACCTGCTGCTTTATATGGCTCCAATAGCAGTGATGGTATTACTTCCTGCAACATTGTTGATGGAGGGAAATGTGATTCAGATCACAATGGATCTTGCCAGAAAGGATATCAGAATTTTTTGGTATCTGCTTCTCAGTTCATCTCTTGCGTATTTTGTGAACCTGACCAATTTTTTGGTGACGAAACATACAAGTGCACTTACCCTTCAGGTTTTAGGAAATGCAAAGGGAGCAGTTGCTGTGGTGGTCTCAATTTTGATATTCAAAAACCCCATTTCAATGATAGGAATGCTTGGCTATGCACTCACTGTCATTGGAGTTATATTGTACAGTGAAACCAAAAAGAGGTATAGCAAAAATTAG

Predicted protein sequences of Glyma01g27110

Limit To All Plant Sequences

>Glyma01g27110.1   sequence type=predicted peptide   gene model=Glyma01g27110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMTMNNIVIIPWSTIGVVIAWYSSNIGVLLLNKYLLSNYGFRFPVFLTTCHMMVCSLFSYVIVSVTDAVPLQRVRSRSQFGRIVALGVVFCFSVVCGNVSLRYIPVSFNQAIGATTPFFTAVFAYAVSAKREAWVTYATLLPVVAGVVVASGGEPSFHLFGFVICVSSTAARAFKSVLQDILLSSEGEKLNSMNLLLYMAPIAVMVLLPATLLMEGNVIQITMDLARKDIRIFWYLLLSSSLAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFKNPISMIGMLGYALTVIGVILYSETKKRYSKN*

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