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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09210 | AT | Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 13 | chr3:2825422-2826850 REVERSE LENGTH=333 | SoyBase | E_val: 2.00E-116 | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0032968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription elongation from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009508 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome | SoyBase | N/A | ISS |
| PF00467 | PFAM | KOW motif | JGI | ISS | |
| PF02357 | PFAM | Transcription termination factor nusG | JGI | ISS | |
| UniRef100_F6MEN9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Plastid transcriptionally active n=1 Tax=Gossypium hirsutum RepID=F6MEN9_GOSHI | SoyBase | E_val: 3.00E-128 | ISS |
| UniRef100_I1J750 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J750_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g26930 not represented in the dataset |
Glyma01g26930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g109100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g26930.2 sequence type=transcript gene model=Glyma01g26930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGCGCTATGGTGAACGTTAGTAATTTAATAAAAGAAGAAAAAACAAACAAAAAAAGAGAGACCCATTTTAACGACTATCCCGAGCTGTAGAAGAAGATATGAGGGGGGTGTTTCTTCCATGGAACCCACCTTGCTTCCACGACGCACTCCATCTCCCTTCCGTCTCGCTCCTGCCAACGAGACCCTTCTTCTTCACCCTCTCAGCCTCCTCCACCCCCTCAGCGCCCGTGGAGTCCGCGTCGCAGCTCAGCGCGCGCGAGAGGAGGCGCGCGAGGAGCGAGAGGAGGGAGACGAGGAGCGGCGCGAAGAACTGGAGGGAGGTGGTGGAGGAGAGGCTCATGGAAAAGCCCAAGAAGCAGAAGGGCTCGTGGATGGACGAGCTGAACCTCGACAATCTCGCCAAGCTGGGTCCACAGTGGTGGGTCATTCGGGTCTCCAGGGTTAAGGGAAACGACATTGCGCAACTCCTCGCTCGCTCGCTCGCCAAGAATTATCCCGATATGGAGTTTAAGATATATGCTCCATCTGTCAATGTGAAAAGGAGATTGAAGAATGGCTCCTACTCCGTTAAACCAAAGCAACTGTTCCCAGGTTGTGTTTTCTTGAGATGTGTGATGAACAAAGAACTACATGACTTCATAAGAGAGTATGATGGTGTTGGAGGCTTTCTTGGTTCCAAGGTTGGAAACACAAAGAGACAGATCAATAGACCGAAGCCAGTGTCTGCTGAAGATATGGAGGCTATCTTCAGACAAGCAAAAGAAGAACAAGAGAAAACTGACCAAGCTTTTGAGCAAGAAGAGAAAAAAGCTTCCCTAGACTCTGGGATTCGCAATACAGAATTAGAACCCGATGATATTTTAAATGCTATTGTTGATTATAAGTCTAAAAGGGGATCTAGAAAAGCTTCTAACCAGGTCAAAGCCACAGATGCTTCATCTACTCGAATCAATTATAAACTCCTTGTTCCAGGTTCCACCGTTCGTGTTCTATCTGGAACATTTTCAGGGTTTACAGGCACCCTCAAGAAGCTGAATCGAAAAACCAAATTGGCCACTGTGCATTTCACTCTATTTGGGAAAGAGAACATAGCAGACATAGACGTTAATGAAATTGCTATAGAGACAAACTGATGAAGTTAAGAAATTCACTGCAAGTTTAGCAGGACACAGGTGGAAGCCTTTTGCTGGTGCTTCATTCCCAAAACTGAAATCTTAGATGTATACGCGCTGAAAGCCTAAAATATGAGGTTTGTAGTTGCATTATGGTATTGCTAATGCAGATTTCACAACTGAATCCCTCATTCCCACTGGCTCTGTAAAAGGAATTGATAATTTGACATAATGAATGAACTTTGTGATTATTGAGTTAAAAAGCATGAGTTGGATTTGTACAACTTTGACTAAAAACAAATTAGGATGACGTGACGTAGTTTTCTTCTCCATTGTGTACATGTTTAATTATTTTTTTGGAAAAAACAATAAAAAAATCTTGAGTTCTGAAA
>Glyma01g26930.1 sequence type=CDS gene model=Glyma01g26930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGGGGTGTTTCTTCCATGGAACCCACCTTGCTTCCACGACGCACTCCATCTCCCTTCCGTCTCGCTCCTGCCAACGAGACCCTTCTTCTTCACCCTCTCAGCCTCCTCCACCCCCTCAGCGCCCGTGGAGTCCGCGTCGCAGCTCAGCGCGCGCGAGAGGAGGCGCGCGAGGAGCGAGAGGAGGGAGACGAGGAGCGGCGCGAAGAACTGGAGGGAGGTGGTGGAGGAGAGGCTCATGGAAAAGCCCAAGAAGCAGAAGGGCTCGTGGATGGACGAGCTGAACCTCGACAATCTCGCCAAGCTGGGTCCACAGTGGTGGGTCATTCGGGTCTCCAGGGTTAAGGGAAACGACATTGCGCAACTCCTCGCTCGCTCGCTCGCCAAGAATTATCCCGATATGGAGTTTAAGATATATGCTCCATCTGTCAATGTGAAAAGGAGATTGAAGAATGGCTCCTACTCCGTTAAACCAAAGCAACTGTTCCCAGGTTGTGTTTTCTTGAGATGTGTGATGAACAAAGAACTACATGACTTCATAAGAGAGTATGATGGTGTTGGAGGCTTTCTTGGTTCCAAGGTTGGAAACACAAAGAGACAGATCAATAGACCGAAGCCAGTGTCTGCTGAAGATATGGAGGCTATCTTCAGACAAGCAAAAGAAGAACAAGAGAAAACTGACCAAGCTTTTGAGCAAGAAGAGAAAAAAGCTTCCCTAGACTCTGGGATTCGCAATACAGAATTAGAACCCGATGATATTTTAAATGCTATTGTTGATTATAAGTCTAAAAGGGGATCTAGAAAAGCTTCTAACCAGGTCAAAGCCACAGATGCTTCATCTACTCGAATCAATTATAAACTCCTTGTTCCAGGTTCCACCGTTCGTGTTCTATCTGGAACATTTTCAGGGTTTACAGGCACCCTCAAGAAGCTGAATCGAAAAACCAAATTGGCCACTGTGCATTTCACTCTATTTGGGAAAGAGAACATAGCAGACATAGACGTTAATGAAATTGCTATAGAGACAAACTGA >Glyma01g26930.2 sequence type=CDS gene model=Glyma01g26930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGGGGTGTTTCTTCCATGGAACCCACCTTGCTTCCACGACGCACTCCATCTCCCTTCCGTCTCGCTCCTGCCAACGAGACCCTTCTTCTTCACCCTCTCAGCCTCCTCCACCCCCTCAGCGCCCGTGGAGTCCGCGTCGCAGCTCAGCGCGCGCGAGAGGAGGCGCGCGAGGAGCGAGAGGAGGGAGACGAGGAGCGGCGCGAAGAACTGGAGGGAGGTGGTGGAGGAGAGGCTCATGGAAAAGCCCAAGAAGCAGAAGGGCTCGTGGATGGACGAGCTGAACCTCGACAATCTCGCCAAGCTGGGTCCACAGTGGTGGGTCATTCGGGTCTCCAGGGTTAAGGGAAACGACATTGCGCAACTCCTCGCTCGCTCGCTCGCCAAGAATTATCCCGATATGGAGTTTAAGATATATGCTCCATCTGTCAATGTGAAAAGGAGATTGAAGAATGGCTCCTACTCCGTTAAACCAAAGCAACTGTTCCCAGGTTGTGTTTTCTTGAGATGTGTGATGAACAAAGAACTACATGACTTCATAAGAGAGTATGATGGTGTTGGAGGCTTTCTTGGTTCCAAGGTTGGAAACACAAAGAGACAGATCAATAGACCGAAGCCAGTGTCTGCTGAAGATATGGAGGCTATCTTCAGACAAGCAAAAGAAGAACAAGAGAAAACTGACCAAGCTTTTGAGCAAGAAGAGAAAAAAGCTTCCCTAGACTCTGGGATTCGCAATACAGAATTAGAACCCGATGATATTTTAAATGCTATTGTTGATTATAAGTCTAAAAGGGGATCTAGAAAAGCTTCTAACCAGGTCAAAGCCACAGATGCTTCATCTACTCGAATCAATTATAAACTCCTTGTTCCAGGTTCCACCGTTCGTGTTCTATCTGGAACATTTTCAGGGTTTACAGGCACCCTCAAGAAGCTGAATCGAAAAACCAAATTGGCCACTGTGCATTTCACTCTATTTGGGAAAGAGAACATAGCAGACATAGACGTTAATGAAATTGCTATAGAGACAAACTGA
>Glyma01g26930.1 sequence type=predicted peptide gene model=Glyma01g26930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGVFLPWNPPCFHDALHLPSVSLLPTRPFFFTLSASSTPSAPVESASQLSARERRRARSERRETRSGAKNWREVVEERLMEKPKKQKGSWMDELNLDNLAKLGPQWWVIRVSRVKGNDIAQLLARSLAKNYPDMEFKIYAPSVNVKRRLKNGSYSVKPKQLFPGCVFLRCVMNKELHDFIREYDGVGGFLGSKVGNTKRQINRPKPVSAEDMEAIFRQAKEEQEKTDQAFEQEEKKASLDSGIRNTELEPDDILNAIVDYKSKRGSRKASNQVKATDASSTRINYKLLVPGSTVRVLSGTFSGFTGTLKKLNRKTKLATVHFTLFGKENIADIDVNEIAIETN* >Glyma01g26930.2 sequence type=predicted peptide gene model=Glyma01g26930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGVFLPWNPPCFHDALHLPSVSLLPTRPFFFTLSASSTPSAPVESASQLSARERRRARSERRETRSGAKNWREVVEERLMEKPKKQKGSWMDELNLDNLAKLGPQWWVIRVSRVKGNDIAQLLARSLAKNYPDMEFKIYAPSVNVKRRLKNGSYSVKPKQLFPGCVFLRCVMNKELHDFIREYDGVGGFLGSKVGNTKRQINRPKPVSAEDMEAIFRQAKEEQEKTDQAFEQEEKKASLDSGIRNTELEPDDILNAIVDYKSKRGSRKASNQVKATDASSTRINYKLLVPGSTVRVLSGTFSGFTGTLKKLNRKTKLATVHFTLFGKENIADIDVNEIAIETN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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