Glyma01g26840 - SoyBase

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Report for Sequence Feature Glyma01g26840

Feature Type:	gene_model
Chromosome:	Gm01
Start:	35643768
stop:	35646603
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g26840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54040	AT	Annotation by Michelle Graham. TAIR10: PAR1 protein \| chr3:20014032-20015299 REVERSE LENGTH=183	SoyBase	E_val: 8.00E-67	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06521	PFAM	PAR1 protein	JGI		ISS
UniRef100_I1J747	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J747_SOYBN	SoyBase	E_val: 1.00E-126	ISS
UniRef100_Q9FXS6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NtEIG-E80 protein n=1 Tax=Nicotiana tabacum RepID=Q9FXS6_TOBAC	SoyBase	E_val: 1.00E-73	ISS

Expression Patterns of Glyma01g26840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g26840

Paralog	Evidence	Comments
Glyma03g15130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g26840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g108700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g26840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g26840

Limit To All Plant Sequences

>Glyma01g26840.2   sequence type=CDS   gene model=Glyma01g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTCTCTACCAAATTGCCTTTGGTCCTATTATTTTCATCCCTTTTCATCCATGCATCTTTGGCTGAGATGGTGTGTGAGGACCTGCCAAAGGAAGTGTGTGCTTTCTCAGTAGCTTCATCAGGGAAGAGGTGTTTGTTGGAGACTGAGAAGGCAGCCGACGGTGGCGTCGAGTACCAATGCCGGACATCGGAAGTGGTGGTGGAGAGGATGGCAGACTACATAGAGACAGACCAATGTGTGGAGGCATGTGGGGTTGATAGGAACTCTGTTGGGATTTCATCTGATGCCTTCTTTGAGCCTCAATTCACCGGCAAGCTTTGCTCTCCTGCATGTTACCAGAAGTGCCCCAACATTGTTGACCTTTTCTTCAACTTGGCTGCTGGAGAGGGGGTATTTTTGCCAGAACTGTGTGAAAAGCACAAGACCAACCCTCGTCGTGCCATGGTTGAACTTGTGAGCTCAGGAGCTGCCCCTGGCCCTGTTTCTGACGTGTCAGAGGCCATTATTGCATCAGCACCTGCCCCTTCTGCCCTGTAA

Predicted protein sequences of Glyma01g26840

Limit To All Plant Sequences

>Glyma01g26840.2   sequence type=predicted peptide   gene model=Glyma01g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFSTKLPLVLLFSSLFIHASLAEMVCEDLPKEVCAFSVASSGKRCLLETEKAADGGVEYQCRTSEVVVERMADYIETDQCVEACGVDRNSVGISSDAFFEPQFTGKLCSPACYQKCPNIVDLFFNLAAGEGVFLPELCEKHKTNPRRAMVELVSSGAAPGPVSDVSEAIIASAPAPSAL*

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