SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54020 | AT | Annotation by Michelle Graham. TAIR10: Arabidopsis Inositol phosphorylceramide synthase 1 | chr3:20006098-20008020 FORWARD LENGTH=305 | SoyBase | E_val: 2.00E-179 | ISS |
| GO:0030148 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0045140 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol phosphoceramide synthase activity | SoyBase | N/A | ISS |
| KOG3058 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21290 | Panther | SPHINGOMYELIN SYNTHETASE | JGI | ISS | |
| PTHR21290:SF1 | Panther | SPINGOMYELIN SYNTHETASE-RELATED, ARATH | JGI | ISS | |
| UniRef100_Q9M325 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol:ceramide inositolphosphotransferase 1 n=1 Tax=Arabidopsis thaliana RepID=IPCS1_ARATH | SoyBase | E_val: 1.00E-176 | ISS |
| UniRef100_UPI0001B63EB2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B63EB2 related cluster n=1 Tax=unknown RepID=UPI0001B63EB2 | SoyBase | E_val: 0 | ISS |
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Glyma01g26700 not represented in the dataset |
Glyma01g26700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g15850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g108000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g26700.1 sequence type=CDS gene model=Glyma01g26700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTTTTACATTGGCCGTGAGGCTTCAAAGCTATGGAAGAGAATTTGTGCAGAGACAACTACAGAGATCAACCTCCTTGCTGAGAATTGGAAGTACCTTCTGGCTGGTCTTGTTTGTCAGTATATACATGGTTTGGCTGCCCGAGGAGTTCATTATTTACATAGGCCTGGCCCTACTCTACAAGATGTTGGATTCTTCCTTCTTCCGGAGCTTGGGCAAGACAAAGCTTACATAAGTGAAACACTGTTTGCCATGATTTTTATATCGTTTGTCTCGTGGACATTTCATCCATTCATATTGAAGAACAGAAAGATCTACACAGTTCTAATATGGTGCAGGGTTTTAGCATTCTTAGTGGGTTCTCAAGTTCTTCGCATAATCACATTTTATTCTACACAACTTCCTGGTCCAAATTACCATTGCCGTGAGGGTTCTAAACTTGCCACATTACCCCGTCCAGATAGTGTCCTTGAAGTGCTATTGATTAATTTTCCACGTGGTGTGGTCTATGGATGTGGTGATTTGATATTCTCATCACACATGATCTTTACACTTGTTTTTGTGCTCACGTATCAGAAATATGGCACTCGAAGGTCACTAAAGCAGCTAGGGTGGTTGCTTGCTGTGGTTCAGAGTCTTTTGATAGTAGCATCTCGCAAACATTACACGGTTGACGTAGTTGTTGCCTGGTACACTGTTAATTTGGTGGTGTTTTTTATTGACAAGAAATTGCCAGAATTACCAGACAGGTCAATTGCAGCTGCAACCTTGCTACCTTTGAGCACCAAAGACAAAGACAGCAGGACCAAAGAGGAGAACCACAAGCTATTGAATGGGAATTCTGGAGACCCTGTAGATTGGAGGCAGAGAACACAAGTGAATGGCAAGATCATGGAAGATGGCAATACACTCCATGCAGACTCTGCCATGAATGGTGCATAG
>Glyma01g26700.1 sequence type=predicted peptide gene model=Glyma01g26700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFYIGREASKLWKRICAETTTEINLLAENWKYLLAGLVCQYIHGLAARGVHYLHRPGPTLQDVGFFLLPELGQDKAYISETLFAMIFISFVSWTFHPFILKNRKIYTVLIWCRVLAFLVGSQVLRIITFYSTQLPGPNYHCREGSKLATLPRPDSVLEVLLINFPRGVVYGCGDLIFSSHMIFTLVFVLTYQKYGTRRSLKQLGWLLAVVQSLLIVASRKHYTVDVVVAWYTVNLVVFFIDKKLPELPDRSIAAATLLPLSTKDKDSRTKEENHKLLNGNSGDPVDWRQRTQVNGKIMEDGNTLHADSAMNGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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