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Report for Sequence Feature Glyma01g26670

Feature Type:gene_model
Chromosome:Gm01
Start:35431737
stop:35435954
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g26670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05830AT Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204 SoyBaseE_val: 5.00E-63ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23012Panther MEMBRANE ASSOCIATED RING FINGER JGI ISS
PTHR23012:SF34Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9SPH2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPH2_RICCO SoyBaseE_val: 3.00E-80ISS
UniRef100_I1J739UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J739_SOYBN SoyBaseE_val: 2.00E-162ISS

Expression Patterns of Glyma01g26670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g26670 not represented in the dataset
Glyma01g26670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g26670
ParalogEvidenceComments
Glyma03g15820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g26670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g107700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g26670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g26670
>Glyma01g26670.1   sequence type=CDS   gene model=Glyma01g26670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTCTACAGTTGTGTCATGTGGTGGATTTGGAGCAAGGGAGTCTCAGTCACCACCGTTCTGTGAGTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCATGCTATTCCCATTTCTATTCAACAAATGGTGACCCTTATGATGATTACACCATTGGTTGTGTTTCTGATGCTGAGGATTCAAGGAAGGCTTCTTCTGTCACTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTGGAGAGGGATTGCAGAATTTGCCATCTTGGTTTGGAGAGTGATAGTCAAGAAGAGTCTGGAGTTCCCATTGAATTGGGCTGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAACTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGGACATGTGAAATATGTCATTCAGTTGCACGGAACGTTTGTGGGGCAAATGAGGAGACAACACAGACATCGAGTGACAGCAACAATGCTAATAATGCAGCATCCACAATCTCAACATCAGCAGAACCTCGAAGATTTTGGCAAGGCCATCGTTTCCTGAATTTTCTGCTTGCTTGTATAGTTTTTGCGTTTGTCATATCGTGGCTTTTTCACTTCAATATGCCCTCGTCGTAA
Predicted protein sequences of Glyma01g26670
>Glyma01g26670.1   sequence type=predicted peptide   gene model=Glyma01g26670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSLQLCHVVDLEQGSLSHHRSVSGSDMSMCFSDAENGSCYSHFYSTNGDPYDDYTIGCVSDAEDSRKASSVTDCSVEVEIESGVPEIKVHLAKVERDCRICHLGLESDSQEESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNRTCEICHSVARNVCGANEETTQTSSDSNNANNAASTISTSAEPRRFWQGHRFLNFLLACIVFAFVISWLFHFNMPSS*






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