SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09250 | AT | Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein | chr3:2839080-2840294 FORWARD LENGTH=244 | SoyBase | E_val: 4.00E-86 | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| PF02151 | PFAM | UvrB/uvrC motif | JGI | ISS | |
| UniRef100_D7L7T2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L7T2_ARALL | SoyBase | E_val: 8.00E-85 | ISS |
| UniRef100_I1J735 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J735_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g26600 not represented in the dataset |
Glyma01g26600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g107100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g26600.2 sequence type=transcript gene model=Glyma01g26600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGGCATTGCCAGATGCACTTGTTCTCTCTGCTGATCTCTGCTCCTTCTTCCACTCTGTTTCGATTTTCCACTTCCAAGGTTACACTCTAAAATCTTTCTGCTATTGTTATTGGATATTCTTTTTGTTAATAATAGTTACTGTTCCTTTTCCACCGTTTCTTTGTTAATTGCTTTGTGTTTTTATCTTTTGAAGTTTCCACACATACCCAAATTGTTTTCCCTTCTTCTATGTGGTTTTTCTTAGCCCCAATTTCGTAAAGTTTTTGTTCTTAATCTTTAATACAATTGGGTTGTTAAATTTTCTTCTTGGGGTGTAAAGATCTCAGAATGGGGATTTTTTCTTGATTCTTTCTCAAGTTAAATTTTAATCTTGGGGTGTTAAATTTTGTTTACCTCAGTGTTAGATAATTCTGATTCTTTATCAAGTGCAAGCTTATCACTAGTTTTTTCTTGTGACTTTCAGGATAAGCATCCTTATGAGTTATTTTTCTCGGCTGGTCAAAGCCATTTTTTAGTTCCTGGTGGAATAGCATTTTCAACTATGGCGCTCTATGGAACCACCTTATCCTTCAATGGAATTTCTTCTACTACCAAGGAGTTTAATATCTTACCATGCTCATTCACCAGTAGCTTTCGGAAGCTACATCATGTTTGTCTACCTTCCTTTACTCCAAACAGATTAGTTTTGGGCAAAAGCTTTGGAAGAGGAGACCAACTGTGTCTTTTACCTGGTCATATTTCAAAGTTGCAAATGGGAAGATTGAGACTGGGAGTAAAAAGTGAAGACTCTGAGAGCATATTGAGTAGCGACAACATTGCATTGGATGAGCAGACATTGGAGGAGGAGCTACAGAATGCCATAGCTGAAGAGAATTATGCTAAGGCAGCAGAAATAAGGGATACTCTGAAAAACCTTCAGAAAGATAGCAAGACAACAGTGTTTGGAGCGAACAGCCGGTTTTACGAATCATTCAGGACTGGTGACCTTGCAGCCATGCAAACCCTGTGGGCAAAAAGCGATGAGGTATGCTGTGTCCACCCTGGTTTGAGAGGAATATCTGGTTACAATGATGTTATCGAGAGCTGGAATTTTGTATGGGCTAACTATGAATTTCCACTAAAAATTAAGCTACAAGACATTAAGGTTCATGCTAGAGGGGATATGGGGTATGTCACTTGCATGGAATTTGTAAAGACGAAAGGGGGCAGATGGGGAGGTCAATTTGTAACAAATGTGTTTGAGAAGATTGATGGACAGTGGTTTATTTGTATCCATCATGCTTCACCAGTAGACTTGTAAATACATCAAACTTTTCAATATAGATAGGAGGTTCACTCTGTAGCTCATCGTTGGTCCTTCTCACTTTCTATGTTTGTACCCATTTTTGTTATGTTTGGGGCCGAATCTCCACTCATCTCCAAAGATTCTTTATGAATTTAACATTACAACTTGATTGTACAACAAATAATCTGTGGAAGTTGAGATGTGGATTAATGAATATATGATAAACTGCCTGAAGTCTCAGGTAAACCGTATGT
>Glyma01g26600.1 sequence type=CDS gene model=Glyma01g26600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACTTGTTCTCTCTGCTGATCTCTGCTCCTTCTTCCACTCTGTTTCGATTTTCCACTTCCAAGGATAAGCATCCTTATGAGTTATTTTTCTCGGCTGGTCAAAGCCATTTTTTAGTTCCTGGTGGAATAGCATTTTCAACTATGGCGCTCTATGGAACCACCTTATCCTTCAATGGAATTTCTTCTACTACCAAGGAGTTTAATATCTTACCATGCTCATTCACCAGTAGCTTTCGGAAGCTACATCATGTTTGTCTACCTTCCTTTACTCCAAACAGATTAGTTTTGGGCAAAAGCTTTGGAAGAGGAGACCAACTGTGTCTTTTACCTGGTCATATTTCAAAGTTGCAAATGGGAAGATTGAGACTGGGAGTAAAAAGTGAAGACTCTGAGAGCATATTGAGTAGCGACAACATTGCATTGGATGAGCAGACATTGGAGGAGGAGCTACAGAATGCCATAGCTGAAGAGAATTATGCTAAGGCAGCAGAAATAAGGGATACTCTGAAAAACCTTCAGAAAGATAGCAAGACAACAGTGTTTGGAGCGAACAGCCGGTTTTACGAATCATTCAGGACTGGTGACCTTGCAGCCATGCAAACCCTGTGGGCAAAAAGCGATGAGGTATGCTGTGTCCACCCTGGTTTGAGAGGAATATCTGGTTACAATGATGTTATCGAGAGCTGGAATTTTGTATGGGCTAACTATGAATTTCCACTAAAAATTAAGCTACAAGACATTAAGGTTCATGCTAGAGGGGATATGGGGTATGTCACTTGCATGGAATTTGTAAAGACGAAAGGGGGCAGATGGGGAGGTCAATTTGTAACAAATGTGTTTGAGAAGATTGATGGACAGTGGTTTATTTGTATCCATCATGCTTCACCAGTAGACTTGTAA >Glyma01g26600.2 sequence type=CDS gene model=Glyma01g26600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTCTATGGAACCACCTTATCCTTCAATGGAATTTCTTCTACTACCAAGGAGTTTAATATCTTACCATGCTCATTCACCAGTAGCTTTCGGAAGCTACATCATGTTTGTCTACCTTCCTTTACTCCAAACAGATTAGTTTTGGGCAAAAGCTTTGGAAGAGGAGACCAACTGTGTCTTTTACCTGGTCATATTTCAAAGTTGCAAATGGGAAGATTGAGACTGGGAGTAAAAAGTGAAGACTCTGAGAGCATATTGAGTAGCGACAACATTGCATTGGATGAGCAGACATTGGAGGAGGAGCTACAGAATGCCATAGCTGAAGAGAATTATGCTAAGGCAGCAGAAATAAGGGATACTCTGAAAAACCTTCAGAAAGATAGCAAGACAACAGTGTTTGGAGCGAACAGCCGGTTTTACGAATCATTCAGGACTGGTGACCTTGCAGCCATGCAAACCCTGTGGGCAAAAAGCGATGAGGTATGCTGTGTCCACCCTGGTTTGAGAGGAATATCTGGTTACAATGATGTTATCGAGAGCTGGAATTTTGTATGGGCTAACTATGAATTTCCACTAAAAATTAAGCTACAAGACATTAAGGTTCATGCTAGAGGGGATATGGGGTATGTCACTTGCATGGAATTTGTAAAGACGAAAGGGGGCAGATGGGGAGGTCAATTTGTAACAAATGTGTTTGAGAAGATTGATGGACAGTGGTTTATTTGTATCCATCATGCTTCACCAGTAGACTTGTAA
>Glyma01g26600.1 sequence type=predicted peptide gene model=Glyma01g26600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHLFSLLISAPSSTLFRFSTSKDKHPYELFFSAGQSHFLVPGGIAFSTMALYGTTLSFNGISSTTKEFNILPCSFTSSFRKLHHVCLPSFTPNRLVLGKSFGRGDQLCLLPGHISKLQMGRLRLGVKSEDSESILSSDNIALDEQTLEEELQNAIAEENYAKAAEIRDTLKNLQKDSKTTVFGANSRFYESFRTGDLAAMQTLWAKSDEVCCVHPGLRGISGYNDVIESWNFVWANYEFPLKIKLQDIKVHARGDMGYVTCMEFVKTKGGRWGGQFVTNVFEKIDGQWFICIHHASPVDL* >Glyma01g26600.2 sequence type=predicted peptide gene model=Glyma01g26600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALYGTTLSFNGISSTTKEFNILPCSFTSSFRKLHHVCLPSFTPNRLVLGKSFGRGDQLCLLPGHISKLQMGRLRLGVKSEDSESILSSDNIALDEQTLEEELQNAIAEENYAKAAEIRDTLKNLQKDSKTTVFGANSRFYESFRTGDLAAMQTLWAKSDEVCCVHPGLRGISGYNDVIESWNFVWANYEFPLKIKLQDIKVHARGDMGYVTCMEFVKTKGGRWGGQFVTNVFEKIDGQWFICIHHASPVDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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