Glyma01g26590 - SoyBase

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Report for Sequence Feature Glyma01g26590

Feature Type:	gene_model
Chromosome:	Gm01
Start:	35185582
stop:	35190582
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g26590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01030	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3527) \| chr5:10638-13003 FORWARD LENGTH=744	SoyBase	E_val: 2.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF12043	PFAM	Domain of unknown function (DUF3527)	JGI		ISS
UniRef100_I1J734	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J734_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FGU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAC95187.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FGU9_ARATH	SoyBase	E_val: 4.00E-57	ISS

Expression Patterns of Glyma01g26590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g26590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g107000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g26590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g26590

Limit To All Plant Sequences

>Glyma01g26590.2   sequence type=CDS   gene model=Glyma01g26590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATCAATATACAGCCAAGTAATGGATTGTTGAAACCTGCTGAGGACATGGGATTTGGTTTGGAGTTCAGAAAGAGCAGCACAAAACAGCATAGCAGTTCAAAGACAGCTAAAGAAAGTTCTGTATTGCCCCATTCGAAACAAAGTTGGAAGGATGCTGAGAAGTTGAAGTCAAAGAGTGATCTCAAACAGAAAGGCAAGTTGGATGCAGAAGGGAAGATTCAGAACTCAGAAACTGTGAGGAGAAGGGCAACTGAAAGAGATGAACTTGTCAAGCACATGTCTAATTTGCCAGGCTATCTCCTGGGTACCGATAAAGTAGAAAACTTTCAAGAGAAAGCTTTCAATGTTGGTGTTCTAGATTGGTCTCGGCTTGAGAAGTGGAAGCATAAGCAGAAGCATATCCCAGTACTAGTTAGTAGTTTCACATCACTCAATAACAGTGAATTGTCATCAAGAACAGCTGCCAAACCATCTATCAGTGTTGGAGGCAAGGAAAAACTTAATGATAAGAAAAGTTTGCTTTCTTCAGGCATAAGGTCATCTTATAGGGAATCCTTTCCTGAAAGTGCCAAACATCCTTTTCATGATGTCAAACGATTTGAATCTTCCAAAACTGTAACTAAGAGCATAGGAGATGAGAAGAGCTTGACACCCCGGGCATTTGAGTACTTTGGAAACAAAACTCACTCAGATATATCACTTGAAAAGGAGAGGAGGAATGGCTATAGTAAAAGAACTTCACAAGTCAAGAATTTTGCATCAAACGCGAAGCTCCATGGCATCTCATATCTTAATGAAAACGGTAGGGATGATGGATCTAAGCAGAACATGGAGGATTGGAAAGAGCATAACCATAATAAAAAAGAGAGAAATTATAAGTCCAGCGCTGATATGGGACATCCATCATTAAAATCAAAAAGAAAAGGGGCATCATCCAGTCCTAAGAAGATGAATTCCAGCTGTAGTGAAACCAGGAAAAAGGTGGATCAGTTGCAGGAATCAGATTTTGACATTGGTCGGAAACATTACCATATCAAGCCAAGTAATATTGTGCTTCTTTGTCCAGTAGAAATTCCCCAGTCAAGTTCTTCAGAGGATTTTCAGCTTTCTGAATCAAGAACGTCATCGGATGAAAATTTTTCGGAATCAACCAAAAGTAGTTTGTCATATGTTTCCCTTCCTGATGAGGTTTACACTCCACAATCCGGGCCACTGCGTTCTGCAGTTGAGTTTTCTTCTTTGGAAATGATGCAACACAGCATTAGTACTGATCTGGGTGTAGATCGTTCTTCTGTTGTGTCTGAGATACCATCTTCCACAATAAATAAAATTTCTAGTCTGCAATCTGCGAGCGCTTGCTTTGAAAAGGATATGTTTGATGCTAAGCTGAGAGATCAGTGTGCTTTTAGTAAATTGAAGGAATCACTGGACCAAGAAACTGCTGAGCTGACAGCTCAGAAGGAAATGAATACTTCCCATAACCGTCGGTTTAGCTTCAGCTTAAGTCGAATTGGAAGAAGTTTCAGCTTCAAAGAGGGGCCTACGCTTCCACAATATAGTTCCATGCATGTTAGTGCAAAGTCTGGTCCGGTGACGCCTCAATCTTCTGTTCGTTGGGATAATCCAAGCAAAGAGAAGGCCAATAGTCATATCAGAAACCGGTCCAGCCCCTTGCGGAGGTTGTTAGACCCTTTATTGAAGCACAAGGCATCAGATAAACACCATTCAGCTCAAAGGGATCAGACACTAGAGGGAATTGCGAATTCAAGCTTCAGGACTATCGGTGTCAATGAATCACTGCTGGCTGAGAAGAGCCAAGGATCATCAGTTCAAGGCCTCTTGCAGCTTACAATAAAAAATGGAGTGCCTTTGTTGAAATTTGTGCTCAACAATGAAAGAAAGATTTTTGCTGCTACCAGGAATAGTTTAGCATCACTGGAGAAGGGTGATTTAGGCAGCTGTTTTACATTCTACCTGGTTAATGAAATTAAGAAAAAGAGTGGTGGATGGATAAGCCATGGAAACAAAGAAAAAAGCTGTGGCTATGCCTACAATGTTATTGCTCAGATGAAGTTTTCTAGCTGTAAAATCACCGAACCAACCAATCAGAACTCCAATAGAAAGTGTATGGTTAAAGAATATGTTCTGGTGGGTGTTGAAATCAGCCAGACGGATCAAGGACCACCGAAGTTCATCCAGAGCATGGAGCTTGCAGCTGTTGTTGTTGAGACCTCATGTGAAAAGAGCACTGTAGGACTGGATGATGATAATAACATGCTGAAGAAAGGATGCTCAAAGTGCTTGACGGATGAAAGATGCTTGTGCAGTTCAGGAGACAATGATGCCTCTGATTGCACTACAGTTGTACTTCCAGGTGGTGTGCATGGTTCACCAAACAAAGGTGAACCTACACCTTTGATCTATCGATGGAAAACCGGGGGATCATGTGATTGCGGGGGTTGGGACATTGGTTGCAGACTGCTTGTGCTCTCCAACCAGAACCAGAATTCAAGTATTGCAAAGAGCTATAAACCTTACAATGATCGTTTTCAACTTTTTGTTAAGGAAGGAGCTGAGCAAGAAAAACCACTTTTCACTTTGTTGCCACTGAAGGATGGTTTCTACTCGGTTGAATTCGACTCAACAATCACTCATTTACAGGCATTTTTCATTTCAGTTGCGGCTTTAAGCTGCCAGAAACTACCAGGTTCCTTGGAAATTGGTAACATGCATGAAGAGATCCTTAACCTTAAGGAACCCAGTTCCAAGAACAACAGAAAACTTCAGGGGAAAGCACCTTTAAAATATGCTCCAATGCCTCCACTATCCCCTGTCGGCAGAGTTTAA

Predicted protein sequences of Glyma01g26590

Limit To All Plant Sequences

>Glyma01g26590.2   sequence type=predicted peptide   gene model=Glyma01g26590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPINIQPSNGLLKPAEDMGFGLEFRKSSTKQHSSSKTAKESSVLPHSKQSWKDAEKLKSKSDLKQKGKLDAEGKIQNSETVRRRATERDELVKHMSNLPGYLLGTDKVENFQEKAFNVGVLDWSRLEKWKHKQKHIPVLVSSFTSLNNSELSSRTAAKPSISVGGKEKLNDKKSLLSSGIRSSYRESFPESAKHPFHDVKRFESSKTVTKSIGDEKSLTPRAFEYFGNKTHSDISLEKERRNGYSKRTSQVKNFASNAKLHGISYLNENGRDDGSKQNMEDWKEHNHNKKERNYKSSADMGHPSLKSKRKGASSSPKKMNSSCSETRKKVDQLQESDFDIGRKHYHIKPSNIVLLCPVEIPQSSSSEDFQLSESRTSSDENFSESTKSSLSYVSLPDEVYTPQSGPLRSAVEFSSLEMMQHSISTDLGVDRSSVVSEIPSSTINKISSLQSASACFEKDMFDAKLRDQCAFSKLKESLDQETAELTAQKEMNTSHNRRFSFSLSRIGRSFSFKEGPTLPQYSSMHVSAKSGPVTPQSSVRWDNPSKEKANSHIRNRSSPLRRLLDPLLKHKASDKHHSAQRDQTLEGIANSSFRTIGVNESLLAEKSQGSSVQGLLQLTIKNGVPLLKFVLNNERKIFAATRNSLASLEKGDLGSCFTFYLVNEIKKKSGGWISHGNKEKSCGYAYNVIAQMKFSSCKITEPTNQNSNRKCMVKEYVLVGVEISQTDQGPPKFIQSMELAAVVVETSCEKSTVGLDDDNNMLKKGCSKCLTDERCLCSSGDNDASDCTTVVLPGGVHGSPNKGEPTPLIYRWKTGGSCDCGGWDIGCRLLVLSNQNQNSSIAKSYKPYNDRFQLFVKEGAEQEKPLFTLLPLKDGFYSVEFDSTITHLQAFFISVAALSCQKLPGSLEIGNMHEEILNLKEPSSKNNRKLQGKAPLKYAPMPPLSPVGRV*

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