Glyma01g25890 - SoyBase

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Report for Sequence Feature Glyma01g25890

Feature Type:	gene_model
Chromosome:	Gm01
Start:	34032832
stop:	34039400
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g25890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37900	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr2:15864396-15866408 REVERSE LENGTH=575	SoyBase	E_val: 0	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF37	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_G7L5K4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR3-B n=1 Tax=Medicago truncatula RepID=G7L5K4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J714	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J714_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g25890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g25890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g105000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g25890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g25890

Limit To All Plant Sequences

>Glyma01g25890.1   sequence type=CDS   gene model=Glyma01g25890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAACAAAGTTGATGCAAATCCTGAGGAATTTAACGATGAGATGAAATGGGTTCGTGATTCTTCATTGGATCACAAAGGAAGAGTTCCTCTCCGAGCTTCAACTGGTTCTTGGAAAGCTTCTATCTTCATTATTGCAATTGAGTTTAGTGAGAGATTGAGCTATTTTGGAATAGCAACTAGCTTGGTCATTTACCTTACAAAAGTTCTTCATCAAGACCTTAAGACAGCAGTTAAGAATGTGAACTATTGGTCTGGTGTCACCACTTTGATGCCATTGTTAGGAGGATTCCTAGCTGATGCTTACTTAGGCCGTTACACCACTGTGATAACATCATGCATCGTTTATCTCATGGGTTTGGTTCTGCTTTCTTTGTCATGGTTCATACCAGGTTTCAAACCATGTGATCATACTAGTACATGCACCGAACCTAGGAGGATTCATGAGGTGGTTTTCTTCCTAGGCATCTATTTAATATCAGTAGGAACTGGAGGGCATAAACCTTCCTTGGAGAGCTTTGGTGCTGATCAATTTGATGATAATAATGCCAAAGAAAGAAGGCAGAAAATGTCCTTTTTCAACTGGTGGAACAGTGGTTTGTGTAGTGGAATCATTCTAGGAGTGACTGTGATTGTGTATGTGCAAGACCATGTCAATTGGGGGGTTGCTGATATCATCCTCACAGGAGTCATGGCTGTCTCATTGCTCATATTCTTGATTGGAAGGTCCTCTTACCGTTACAGGACACCAATTGGGAGCCCCTTGACTCCTATGTTGCAAGTTCTTGTTGCTGCTATTTCCAAAAGAAAGCTTCCATATCCTTCCAATCCAACTCAATTGTATGAAGTTTCCAAGTCTGAGGGCAACAATGAAAGATTTCTGGCTCACACCAAGAAACTCAAATTTCTTGACAAGGCAGCAATTATTGAAAATGAAGGGAACATAGCAGAGAAACAGAGTCCATGGAGACTTGCAACAGTAACTAAGGTTGAAGAACTGAAACTAATCATCAACATGATCCCCATTTGGGTGTTCACATTACCATTTGGAATATGTGCTTCCCAAACCTCTACTTTCTTCATCAAGCAAGGTGCCATCATGAACAGAAAAATAGGCAATGGATTTGTGGTTCCCCCAGCTTCAATTTTCACTCTTGCAGCCATAGGGATGATAGTTTCAGTGATCATCTATGACAAGCTCCTTGTGCCAGTGCTAAGAAAACTAACAGGAAATGAGAGAGGAATCAACATCCTCCAAAGGATTGGCATTGGAATGATCTTCTCAGTCATCACAATGATAGCTGCAGCTTTGGTGGAAAAGAAGAGGCTTGAGGCTGTTGAGATGAATGGCCCATTAAAGGGTTCTTTGTCAATGAGTGCCCTTTGGTTGGCCCCACAATTTCTCATCATTGGATTTGGTGATGGGTTTGCTCTTGTGGGCTTGCAAGAGTATTTCTATGACCAAGTGCCAGACTCAATGAGAAGCCTTGGAATAGCACTTTACCTTAGTGTCATTGGAGCTGCAAGTTTTCTTAGTAGTTTATTAATAACAATTGTGGATCATGTCACAGGCAAGAGTGGGAAGAGTTGGATTGGCAAGGATTTGAATAGTAGCCGCTTGGACAAATTTTATTGGCTTCTTGCAGCCATCACCACATTGAACTTGTTCGTGTTTGTGTTCTTTGCTCGCAGATATAACTACAAGAATGTGCAAAAGGTGGCAGTGGCTGATTGCTATGAAGGCAAAAGTGATGATGGTGGACCAGAGACTAAGGTTTGA

Predicted protein sequences of Glyma01g25890

Limit To All Plant Sequences

>Glyma01g25890.1   sequence type=predicted peptide   gene model=Glyma01g25890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKNKVDANPEEFNDEMKWVRDSSLDHKGRVPLRASTGSWKASIFIIAIEFSERLSYFGIATSLVIYLTKVLHQDLKTAVKNVNYWSGVTTLMPLLGGFLADAYLGRYTTVITSCIVYLMGLVLLSLSWFIPGFKPCDHTSTCTEPRRIHEVVFFLGIYLISVGTGGHKPSLESFGADQFDDNNAKERRQKMSFFNWWNSGLCSGIILGVTVIVYVQDHVNWGVADIILTGVMAVSLLIFLIGRSSYRYRTPIGSPLTPMLQVLVAAISKRKLPYPSNPTQLYEVSKSEGNNERFLAHTKKLKFLDKAAIIENEGNIAEKQSPWRLATVTKVEELKLIINMIPIWVFTLPFGICASQTSTFFIKQGAIMNRKIGNGFVVPPASIFTLAAIGMIVSVIIYDKLLVPVLRKLTGNERGINILQRIGIGMIFSVITMIAAALVEKKRLEAVEMNGPLKGSLSMSALWLAPQFLIIGFGDGFALVGLQEYFYDQVPDSMRSLGIALYLSVIGAASFLSSLLITIVDHVTGKSGKSWIGKDLNSSRLDKFYWLLAAITTLNLFVFVFFARRYNYKNVQKVAVADCYEGKSDDGGPETKV*

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