SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g25861

Feature Type:gene_model
Chromosome:Gm01
Start:33970040
stop:33970770
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g25861
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23740AT Annotation by Michelle Graham. TAIR10: ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159 SoyBaseE_val: 8.00E-67ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR10744Panther 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER JGI ISS
PTHR10744:SF2Panther 30S RIBOSOMAL PROTEIN S17 JGI ISS
PF00366PFAM Ribosomal protein S17 JGI ISS
UniRef100_P17093UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S11 n=2 Tax=Glycine max RepID=RS11_SOYBN SoyBaseE_val: 1.00E-69ISS
UniRef100_UPI0002337ADDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337ADD related cluster n=1 Tax=unknown RepID=UPI0002337ADD SoyBaseE_val: 1.00E-72ISS

Expression Patterns of Glyma01g25861
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g25861 not represented in the dataset
Glyma01g25861 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g25861 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g104900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g25861
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g25861
>Glyma01g25861.1   sequence type=CDS   gene model=Glyma01g25861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAACTTTTTTTTTTTTCTTCCATACAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGGGGTCGTATCTTAGCCGGTACTTGTCACAGTGCTAAGATGTCAAGGACCATTATTGTTAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGTCATTCAAATATTCCAGCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCGAAGACGGTGAGGTTCAATGTGTTGAAAGTGATCCCAGGTGGATCCTCTAGCGGTGCAAAGAAGGGTTTTACTGGAATGTGA
Predicted protein sequences of Glyma01g25861
>Glyma01g25861.1   sequence type=predicted peptide   gene model=Glyma01g25861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTFFFFFHTGTYIDKKCPFTGNVSIRGRILAGTCHSAKMSRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPGGSSSGAKKGFTGM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo