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Report for Sequence Feature Glyma01g25830

Feature Type:gene_model
Chromosome:Gm01
Start:33967103
stop:33969353
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53950AT Annotation by Michelle Graham. TAIR10: glyoxal oxidase-related protein | chr3:19975704-19977341 FORWARD LENGTH=545 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07250PFAM Glyoxal oxidase N-terminus JGI ISS
PF09118PFAM Domain of unknown function (DUF1929) JGI ISS
UniRef100_C8CPQ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glyoxal oxidase n=1 Tax=Vitis vinifera RepID=C8CPQ3_VITVI SoyBaseE_val: 0ISS
UniRef100_I1J712UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J712_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g104800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g25830.1   sequence type=CDS   gene model=Glyma01g25830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTTCATCACCTCACTCTCTCACCATGCAGAACCCCTCTGCTTACCTGTCATGCTTTCTTATCCTCTTGATCATTCTTTTCCCAACCCACGCACGTGCCGACCTCCCCGGCACGTGGGAGCTTCTCGTCCCGGACGCCGGCATCGCCTCCATGCACACCGCCGTCACGCGGTTCAACACGGTGGTCCTCCTAGACCGCACCAACATAGGCCCGTCCCGAAAACTCCTCCCAAAAGGCCACTGCCGGTCGGACAAAAACGACGCCGTCCTGAAGCTCGACTGCTACGCCCACTCCGTCCACCTCGACCTTGCCACCAACCAAATCCGCCCTTTAAAAATCCTCACCGACACCTGGTGCTCCTCCGGCCAGTTCCTCCCCGACGGCACCCTCCTCCAGACCGGCGGCGACCTCGACGGCCTCAAAAAGATCCGCAAATTCTCCCCGTGCGACGACGCTTCGTGTGATTGGGAAGAGCTCAACGACGTCGTATTGGCCGAGGGCCGATGGTACGCCACCAACCAGATCCTCCCTGACGGTTCTGTCATCATAATCGGCGGACGCGGCTCCAACACTGTCGAATTCTTCCCACCCAAACAAAACGTCGCCGTTTCGTTCCCTTTCTTATCCGAAACGGAAGACACGCAAATGGATAACCTTTACCCCTACGTCCACCTTCTCCCAAACGGTCACCTTTTTGTTTTCGCTAACACAAGATCGGTCATGTACGATTTCAACCGCCACGTCATCGTTAAGGAATACCCTAAATTACAAGGTGGCCCGAGAAACTACCCTTCCGCAGGGTCATCAGCGATGTTAGCTTTAGAAGGAGACTATTCTAAAGCTGAGATTGTGGTTTGTGGGGGTGCACAATACGGAGCGTTTTTGATGCGGAGTACTGACACCCCGGCGCACGGTAGCTGCGGCCGCATTTTAGCGATGGAAGAGAAACCCAGATGGGTAATGGAAGACATGCCGTTTGGGAGGATTATGGGGGATATGGTGATGCTGCCAAACGGCGACGTTTTGATTATTAATGGAGCGATGTCGGGGACTCAGGGTTTTGAGATGGCGAGTGATCCGTGTTTGAACCCGGTTCTGTACCGGCCCGACCAACCGGTCGGGTTGCGGTTCATGGTTTTGAACCCCGGGACGGTTCCGAGGATGTACCACGCGACAGCGAATCTGTTACCTGATGCGAGGGTTTTGCTTGCGGGGAGTAACCCCCATGTTCTGTACCGGTTCAATGACGTGGAGTTTCCGACCGAGTTGCGGGTTGAAGCGTTCTCGCCCGAGTATTTGTCTGCGGACCGAGCCAATCTTAGACCGGTTATTGAGGAGGTGCCCGAAACGGTGCGTTTTGGTGGGAAGTTTGATGTGGTGGTTTCGGTTGCTTTGCCTGTGGTGGGGATTGTGGAAGTGAATTTGGCAAGTGCGCCTTTTGCCACGCACTCGTTCTCGCAGGGTCAACGTTTGGTCAAACTGGCTGTTTCCTCTGCTGTGCCTGACGGCGGTGACGGCAGGTATCGAATTGGGGTAACAGCTCCGCCGAGTGGGGCGGTGGCGCCGCCGGGGTACTACATGGCATTTGCGGTGAACCAGGGAGTGCCCAGTGTTGCAAAGTGGATTCACGTGTCGTAA

>Glyma01g25830.1   sequence type=predicted peptide   gene model=Glyma01g25830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEASSPHSLTMQNPSAYLSCFLILLIILFPTHARADLPGTWELLVPDAGIASMHTAVTRFNTVVLLDRTNIGPSRKLLPKGHCRSDKNDAVLKLDCYAHSVHLDLATNQIRPLKILTDTWCSSGQFLPDGTLLQTGGDLDGLKKIRKFSPCDDASCDWEELNDVVLAEGRWYATNQILPDGSVIIIGGRGSNTVEFFPPKQNVAVSFPFLSETEDTQMDNLYPYVHLLPNGHLFVFANTRSVMYDFNRHVIVKEYPKLQGGPRNYPSAGSSAMLALEGDYSKAEIVVCGGAQYGAFLMRSTDTPAHGSCGRILAMEEKPRWVMEDMPFGRIMGDMVMLPNGDVLIINGAMSGTQGFEMASDPCLNPVLYRPDQPVGLRFMVLNPGTVPRMYHATANLLPDARVLLAGSNPHVLYRFNDVEFPTELRVEAFSPEYLSADRANLRPVIEEVPETVRFGGKFDVVVSVALPVVGIVEVNLASAPFATHSFSQGQRLVKLAVSSAVPDGGDGRYRIGVTAPPSGAVAPPGYYMAFAVNQGVPSVAKWIHVS*







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