Report for Sequence Feature Glyma01g25830
Feature Type: gene_model
Chromosome: Gm01
Start: 33967103
stop: 33969353
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g25830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G53950 AT
Annotation by Michelle Graham. TAIR10: glyoxal oxidase-related protein | chr3:19975704-19977341 FORWARD LENGTH=545
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF07250 PFAM
Glyoxal oxidase N-terminus
JGI ISS
PF09118 PFAM
Domain of unknown function (DUF1929)
JGI ISS
UniRef100_C8CPQ3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glyoxal oxidase n=1 Tax=Vitis vinifera RepID=C8CPQ3_VITVI
SoyBase E_val: 0 ISS
UniRef100_I1J712 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J712_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g25830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma01g25830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g104800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g25830
Coding sequences of Glyma01g25830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g25830.1 sequence type=CDS gene model=Glyma01g25830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCTTCATCACCTCACTCTCTCACCATGCAGAACCCCTCTGCTTACCTGTCATGCTTTCTTATCCTCTTGATCATTCTTTTCCCAACCCACGCACGTGCCGACCTCCCCGGCACGTGGGAGCTTCTCGTCCCGGACGCCGGCATCGCCTCCATGCACACCGCCGTCACGCGGTTCAACACGGTGGTCCTCCTAGACCGCACCAACATAGGCCCGTCCCGAAAACTCCTCCCAAAAGGCCACTGCCGGTCGGACAAAAACGACGCCGTCCTGAAGCTCGACTGCTACGCCCACTCCGTCCACCTCGACCTTGCCACCAACCAAATCCGCCCTTTAAAAATCCTCACCGACACCTGGTGCTCCTCCGGCCAGTTCCTCCCCGACGGCACCCTCCTCCAGACCGGCGGCGACCTCGACGGCCTCAAAAAGATCCGCAAATTCTCCCCGTGCGACGACGCTTCGTGTGATTGGGAAGAGCTCAACGACGTCGTATTGGCCGAGGGCCGATGGTACGCCACCAACCAGATCCTCCCTGACGGTTCTGTCATCATAATCGGCGGACGCGGCTCCAACACTGTCGAATTCTTCCCACCCAAACAAAACGTCGCCGTTTCGTTCCCTTTCTTATCCGAAACGGAAGACACGCAAATGGATAACCTTTACCCCTACGTCCACCTTCTCCCAAACGGTCACCTTTTTGTTTTCGCTAACACAAGATCGGTCATGTACGATTTCAACCGCCACGTCATCGTTAAGGAATACCCTAAATTACAAGGTGGCCCGAGAAACTACCCTTCCGCAGGGTCATCAGCGATGTTAGCTTTAGAAGGAGACTATTCTAAAGCTGAGATTGTGGTTTGTGGGGGTGCACAATACGGAGCGTTTTTGATGCGGAGTACTGACACCCCGGCGCACGGTAGCTGCGGCCGCATTTTAGCGATGGAAGAGAAACCCAGATGGGTAATGGAAGACATGCCGTTTGGGAGGATTATGGGGGATATGGTGATGCTGCCAAACGGCGACGTTTTGATTATTAATGGAGCGATGTCGGGGACTCAGGGTTTTGAGATGGCGAGTGATCCGTGTTTGAACCCGGTTCTGTACCGGCCCGACCAACCGGTCGGGTTGCGGTTCATGGTTTTGAACCCCGGGACGGTTCCGAGGATGTACCACGCGACAGCGAATCTGTTACCTGATGCGAGGGTTTTGCTTGCGGGGAGTAACCCCCATGTTCTGTACCGGTTCAATGACGTGGAGTTTCCGACCGAGTTGCGGGTTGAAGCGTTCTCGCCCGAGTATTTGTCTGCGGACCGAGCCAATCTTAGACCGGTTATTGAGGAGGTGCCCGAAACGGTGCGTTTTGGTGGGAAGTTTGATGTGGTGGTTTCGGTTGCTTTGCCTGTGGTGGGGATTGTGGAAGTGAATTTGGCAAGTGCGCCTTTTGCCACGCACTCGTTCTCGCAGGGTCAACGTTTGGTCAAACTGGCTGTTTCCTCTGCTGTGCCTGACGGCGGTGACGGCAGGTATCGAATTGGGGTAACAGCTCCGCCGAGTGGGGCGGTGGCGCCGCCGGGGTACTACATGGCATTTGCGGTGAACCAGGGAGTGCCCAGTGTTGCAAAGTGGATTCACGTGTCGTAA
Predicted protein sequences of Glyma01g25830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g25830.1 sequence type=predicted peptide gene model=Glyma01g25830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEASSPHSLTMQNPSAYLSCFLILLIILFPTHARADLPGTWELLVPDAGIASMHTAVTRFNTVVLLDRTNIGPSRKLLPKGHCRSDKNDAVLKLDCYAHSVHLDLATNQIRPLKILTDTWCSSGQFLPDGTLLQTGGDLDGLKKIRKFSPCDDASCDWEELNDVVLAEGRWYATNQILPDGSVIIIGGRGSNTVEFFPPKQNVAVSFPFLSETEDTQMDNLYPYVHLLPNGHLFVFANTRSVMYDFNRHVIVKEYPKLQGGPRNYPSAGSSAMLALEGDYSKAEIVVCGGAQYGAFLMRSTDTPAHGSCGRILAMEEKPRWVMEDMPFGRIMGDMVMLPNGDVLIINGAMSGTQGFEMASDPCLNPVLYRPDQPVGLRFMVLNPGTVPRMYHATANLLPDARVLLAGSNPHVLYRFNDVEFPTELRVEAFSPEYLSADRANLRPVIEEVPETVRFGGKFDVVVSVALPVVGIVEVNLASAPFATHSFSQGQRLVKLAVSSAVPDGGDGRYRIGVTAPPSGAVAPPGYYMAFAVNQGVPSVAKWIHVS*