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Report for Sequence Feature Glyma01g25710

Feature Type:gene_model
Chromosome:Gm01
Start:33743093
stop:33750073
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g25710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02030AT Annotation by Michelle Graham. TAIR10: POX (plant homeobox) family protein | chr5:395754-398872 FORWARD LENGTH=575 SoyBaseE_val: 3.00E-122ISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0007389GO-bp Annotation by Michelle Graham. GO Biological Process: pattern specification process SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009886GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010076GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity SoyBaseN/AISS
GO:0010077GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of inflorescence meristem identity SoyBaseN/AISS
GO:0010154GO-bp Annotation by Michelle Graham. GO Biological Process: fruit development SoyBaseN/AISS
GO:0010223GO-bp Annotation by Michelle Graham. GO Biological Process: secondary shoot formation SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0048438GO-bp Annotation by Michelle Graham. GO Biological Process: floral whorl development SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0048457GO-bp Annotation by Michelle Graham. GO Biological Process: floral whorl morphogenesis SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0048507GO-bp Annotation by Michelle Graham. GO Biological Process: meristem development SoyBaseN/AISS
GO:0048513GO-bp Annotation by Michelle Graham. GO Biological Process: organ development SoyBaseN/AISS
GO:0048519GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process SoyBaseN/AISS
GO:0048645GO-bp Annotation by Michelle Graham. GO Biological Process: organ formation SoyBaseN/AISS
GO:0080006GO-bp Annotation by Michelle Graham. GO Biological Process: internode patterning SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0773 KOG Transcription factor MEIS1 and related HOX domain proteins JGI ISS
PTHR11850Panther HOMEOBOX PROTEIN JGI ISS
PTHR11850:SF51Panther PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR 1 JGI ISS
PF00046PFAM Homeobox domain JGI ISS
PF07526PFAM Associated with HOX JGI ISS
UniRef100_B9SV36UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9SV36_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI00023372DDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023372DD related cluster n=1 Tax=unknown RepID=UPI00023372DD SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g25710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g25710 not represented in the dataset
Glyma01g25710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g25710
ParalogEvidenceComments
Glyma03g17397 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g25710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g104200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g25710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g25710
>Glyma01g25710.2   sequence type=CDS   gene model=Glyma01g25710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAACAAAGCAGAAGAGATAAGCTGAGGGTTGTGGCGACACAGAACCAACATGGTCTCGTTGAGCCCTCGTCTTTGCTTCCTTTGTACGACCCTTCTTCGTTTATATCTTCTGATTTGTTGACAAGCTTCCACAACGGCCAAAAACACAACTTGGGTTGTGGTATGAAGGAAGAACGTGCGAATTTGATGATGGGTTTTGCAGCAGCAGCAGGAGGGGGAGGAGTTATGAACAACGGCTCTTCTTCTTCGTGTTGTTCTTCTAACTCCTCTTCTGTTTCTTACTTGGATCCTGAATCGTCTTTGCCTTTGAACCAAGCCACAATTCAGGTTATTAACAATAGCAACAACAACAACATGTTTCTCTACCAAGCACAGAACCTGAGAGAGTTTGATCAGGGTTATAATAATAATAACAACAATAATAGTGAAATCATGGTGTTTAAGCCCGAGCCTTTGTCTTTGTCTCTGTCATCACACAACAACGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTATGGTGATAAGGTTGGTGGGGTTGGTGGTGGTGGTGGTGGTGGTGTAGTGATTTATGGTGGTTCTGGTTTGAATGAGGTTTCAAGGTGCACAGTGCCAATGGGGCCATTTACTGGCTATGCTTCTATATTGAAGGGATCGAGGTTCTTGAAGCCTGCGCAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGGGTTTGTGCTGAGAAGATTGTGGCTGATGCATCATTAATGGAGCCTATTCCTCCAGAGAGTTCAAGTGAAGATCCATTAGGGGATCATGGGGGTGATCAGGGTCGCAAAAAATCTAGGCTCTTAACTATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCAAGCGGTAGTAACTTCATTTGAGTATGTTTCTGGCCTGAGCAATGCAGCTCCCTATGCAAGTTTGGCTATAAAAGCTATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGATCAGATTCAGTTTGCCAATAAAGCTCATTTTCATATCAGCAACAGGAAAGATGAATCTCCAAGGTTTGGCAACAGTGATAGAGGCCCATATGGCCAAAGGCCTGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGCGCTGTGACTGTCCTCAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACTGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCCAGAGTAAGGCTCTGGAAGCCAATGGTGGAAGAAATACATATGCTAGAAACACGGCAAGCTCCAAAGAATCTGCAGAAGGAAGAACATTGCACGAACAAGCCAAGTGATCATTTGCCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTACTTCCACAGATAAATTTCAGGAAGCTCCTTACAAGCGTGCCATAAACGAGCTTCCTAACATACCAGTCAGGACTCAGGAACAGCTGAATCTTCCCTGCACAAGCAATCAGCCAGGGGGTGTTGGAGTGAGCATGGGTGGCAGTGCAAGCAATAGTGTGTCACTCACACTAGGCCTCTATCAAAACCATGGTATTGGTTTGGCTGAACCTTTCCCCTTGAATGCAGCGCAGCGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTACGTTATGAGTGATTATGAGTCACAAAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTGTTGCATGACTTTGTAGGCTGA
Predicted protein sequences of Glyma01g25710
>Glyma01g25710.2   sequence type=predicted peptide   gene model=Glyma01g25710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEGFEAYHVPQQSRRDKLRVVATQNQHGLVEPSSLLPLYDPSSFISSDLLTSFHNGQKHNLGCGMKEERANLMMGFAAAAGGGGVMNNGSSSSCCSSNSSSVSYLDPESSLPLNQATIQVINNSNNNNMFLYQAQNLREFDQGYNNNNNNNSEIMVFKPEPLSLSLSSHNNGVNLQRYGSVVYGDKVGGVGGGGGGGVVIYGGSGLNEVSRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKIVADASLMEPIPPESSSEDPLGDHGGDQGRKKSRLLTMLDEVYRRYRQYYQQMQAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQIQFANKAHFHISNRKDESPRFGNSDRGPYGQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAPKNLQKEEHCTNKPSDHLPSDNSIVSENPSTSTDKFQEAPYKRAINELPNIPVRTQEQLNLPCTSNQPGGVGVSMGGSASNSVSLTLGLYQNHGIGLAEPFPLNAAQRFGVALETNNEGYVMSDYESQNRHFGRDVIGGQLLHDFVG*






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