Glyma01g25690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g25690

Feature Type:	gene_model
Chromosome:	Gm01
Start:	33714522
stop:	33724227
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g25690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18870	AT	Annotation by Michelle Graham. TAIR10: isochorismate synthase 2 \| chr1:6515486-6519176 FORWARD LENGTH=562	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0042372	GO-bp	Annotation by Michelle Graham. GO Biological Process: phylloquinone biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0008909	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isochorismate synthase activity	SoyBase	N/A	ISS
KOG1223	KOG	Isochorismate synthase	JGI		ISS
PTHR11236	Panther	AMINOBENZOATE/ANTHRANILATE SYNTHASE	JGI		ISS
PTHR11236:SF3	Panther	ISOCHORISMATE SYNTHASE	JGI		ISS
PF00425	PFAM	chorismate binding enzyme	JGI		ISS
UniRef100_G7JQL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isochorismate synthase n=1 Tax=Medicago truncatula RepID=G7JQL8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J709	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J709_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g25690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g25690

Paralog	Evidence	Comments
Glyma03g17420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g25690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g104100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g25690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g25690

Limit To All Plant Sequences

>Glyma01g25690.1   sequence type=CDS   gene model=Glyma01g25690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGGCACGGTTCACAAGTGGCTCACTCATTTCACCGACACCAAAAAATGCAACAACATTCTCGTACCTCCTGCTTCCAAGGAACAGCAATCCATATACTTCCTCCAATACCATAGACCCGTGTATCAAAGATGCCACCTTTCAATGAATGGTTGCAGAGAGGGACAGCACCAATATTCAAGAACAAGGAACCCTGTTGGAACCATAGAAACCAAAACCTTGGCACCAGTTGCATCACCTGCAATGGCTATGTACAGCCTCAACATGGCCATTTCGGAGCTGGAATCGGAGGCTCCGTTCGGTACCTCTTCCGGCATTGTAAGGGTGCAGGTGCCAATTGAAGAGCAAGTTGAAGCCATTGATTGGCTTCTCTCACAGAACCACCTTCTCCTTCCTCGCTGCTTCTTCTTTGGAAGGAAACAGTACAGTCCCTGCTGCAATGGTGAAGAAAAGTTGGTCAGTGTTGCTGGGGTGGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCATTTTCATACTGGGATTGGATATCTATAAGGAGGTTTCTTTCTGAGAGATGCCCCTTAATCCGTGCCTATGGAGCTATCCGTTTCAATGCAAAAGCTAAGGTGTCATCAGAGTGGCTGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTTGAGTTCAATGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCTTGGGATAATAATCTTTCTTGGTCATGGGAAAATGCAATCAATGCCCTCCAAGAAACACTACGCAACGTTTCTTCTTCCATTGTGAAGTTTCCAAAACAAACTCCTCCAACATTAATATCAAGCAGCCATAACATTCCTAGTAAAGTAGACTGGGATCTTGCTGTTAATGGAGCTTTGCAGATGATAAAGCGAAATGATTCCTTACTAACTAAGGTTGTGCTAGCTCGTAGCACTAGAGTAGTGCCTACTGCTGATATTGATCCTCTTGCATGGTTATCGTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTTTACTTCAGCCACCAAATGCACCAGCATTTATTGGAAACACACCAGAGCAACTATTTCACAGAAAATGTCTCCACATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGCATCACAAGCACTAGATTGCCAAATTGAACTTGACTTACTTACCAGTCCAAAGGATGACATTGAGTTTACTATAGTGAGAGACACCATAAGAAGAAAATTAGAGGCAGTATGTGAAAAAGTTGTAATCAAGCCAGAGAAAATGATAAGAAAACTCCCCAGGATTCAACATTTATATTCTCAATTATCTGGCAGGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTGTCATCTCTTCACCCGAGTCCAGCAGTTTGTGGGTTTCCAACAGAAGAGGCACAACTTTTAATTGCAGAAACAGAAGTATTTGATCGAGGAATGTATGCTGGACCTGTTGGTTGGTTTGGTGGAGGAGAGAGTGAGTTTGCTGTTGGCATCAGGTCAGCATTGGTGGAAAAGGATCTTGGTGCTTTTATATATGCTGGGACAGGGATAGTGGAAGGCAGCAGTCCTTACCTGGAGTGGGATGAGCTAGAGCTCAAGACATCTCAGTTCACCAAGTTGCTCAAGCTTGACTTGCCTCGGAGACAAAAAGTAGATTGCAAATGA

Predicted protein sequences of Glyma01g25690

Limit To All Plant Sequences

>Glyma01g25690.1   sequence type=predicted peptide   gene model=Glyma01g25690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMGTVHKWLTHFTDTKKCNNILVPPASKEQQSIYFLQYHRPVYQRCHLSMNGCREGQHQYSRTRNPVGTIETKTLAPVASPAMAMYSLNMAISELESEAPFGTSSGIVRVQVPIEEQVEAIDWLLSQNHLLLPRCFFFGRKQYSPCCNGEEKLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFNELEGGSMLTITIAWDNNLSWSWENAINALQETLRNVSSSIVKFPKQTPPTLISSSHNIPSKVDWDLAVNGALQMIKRNDSLLTKVVLARSTRVVPTADIDPLAWLSCLKVEGENAYQFLLQPPNAPAFIGNTPEQLFHRKCLHITSEALAGTRARGASQALDCQIELDLLTSPKDDIEFTIVRDTIRRKLEAVCEKVVIKPEKMIRKLPRIQHLYSQLSGRLRSEEDEFEILSSLHPSPAVCGFPTEEAQLLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGAFIYAGTGIVEGSSPYLEWDELELKTSQFTKLLKLDLPRRQKVDCK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain