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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55510 | AT | Annotation by Michelle Graham. TAIR10: branched-chain alpha-keto acid decarboxylase E1 beta subunit | chr1:20723482-20725505 FORWARD LENGTH=352 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003863 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity | SoyBase | N/A | ISS |
| KOG0525 | KOG | Branched chain alpha-keto acid dehydrogenase E1, beta subunit | JGI | ISS | |
| PTHR11624 | Panther | DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11624:SF21 | Panther | THIAMINE PYROPHOSPHATE-DEPENDENT DEHYDROGENASES, E1 COMPONENT BETA SUBUNIT-RELATED | JGI | ISS | |
| PF02779 | PFAM | Transketolase, pyrimidine binding domain | JGI | ISS | |
| PF02780 | PFAM | Transketolase, C-terminal domain | JGI | ISS | |
| UniRef100_C6TGA9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TGA9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JTF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Medicago truncatula RepID=G7JTF7_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma01g25010 not represented in the dataset |
Glyma01g25010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g103100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g25010.1 sequence type=CDS gene model=Glyma01g25010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAACCAAGTTTGGAAGATTGGTGCCTTTGGTTTTTTCCAAAAGGGGATTTTCCACCTCCACCAGTATTCAAAAGGGTGGTTCTGAGGAAGGTTTAAAATCATTGAACCTCTGTTCTGCAATTAATCAGGCTCTTCACATTGCCTTGGACACTGATCCCCGTTCTTATGTTTTTGGAGAGGATGTCAGCTTCGGTGGGGTCTTCCGTTGCACCACTGGATTAGCAGACCAATTTGGTAAAAAGAGGGTTTTCAATACTCCTCTCTGTGAGCAGGGTATTGTTGGTTTTGGCATTGGTCTAGCTGCCATGGGAAATCGAGCCATAGCAGAAATCCAGTTTGCAGATTACATTTTCCCTGCTTTTGACCAGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGTGGTAACCAATTTAATTGTGGAGGTTTAACAGTTAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGGCATTACCACTCTCAGTCTCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCACGGGAAGCAAAAGGGTTATTGCTATCTTGCGTACGAGATCCAAATCCTATAGTATTTTTTGAACCGAAGTGGCTTTATCGTTTGGCTGTTGAAGAAGTACCAGAGGATGACTACATGCTGCCTTTATCTGAGGCTGAGGTAATTCGGCAAGGAAGTGATATAACACTTGTTGGATGGGGAGCTCAATTATCTATAATGGAACAAGCTTGTCTTGATGCTGAAAAAGAAGGAATTTCTTGTGAATTGATTGATCTGAAGACACTAATTCCTTGGGATAAGGAAACAGTAGAGGCCTCAGTTAACAAGACAGGAAGATTGCTTGTTAGTCATGAAGCTCCTATAACTGGAGGTTTTGGTGCTGAAATCTCAGCTTCCATTGTTGAGCGTTGCTTCTCAAGGTTAGAGGCCCCTGTAGCAAGAATTTGTGGTCTGGACACTCCTTTTCCTTTAGTTTTTGAACCTTTCTACATGCCATCAAAAAATAAGATATTGGATGCAATTAAATCAACTGTGAACTACTAA
>Glyma01g25010.1 sequence type=predicted peptide gene model=Glyma01g25010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTKFGRLVPLVFSKRGFSTSTSIQKGGSEEGLKSLNLCSAINQALHIALDTDPRSYVFGEDVSFGGVFRCTTGLADQFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSCVRDPNPIVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVIRQGSDITLVGWGAQLSIMEQACLDAEKEGISCELIDLKTLIPWDKETVEASVNKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPVARICGLDTPFPLVFEPFYMPSKNKILDAIKSTVNY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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