Glyma01g25000 - SoyBase

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Report for Sequence Feature Glyma01g25000

Feature Type:	gene_model
Chromosome:	Gm01
Start:	33038314
stop:	33043683
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g25000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37770	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr2:15834888-15836659 FORWARD LENGTH=315	SoyBase	E_val: 0	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004033	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity	SoyBase	N/A	ISS
GO:0008106	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0016229	GO-mf	Annotation by Michelle Graham. GO Molecular Function: steroid dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0070401	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP+ binding	SoyBase	N/A	ISS
KOG1577	KOG	Aldo/keto reductase family proteins	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF34	Panther	3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_D7LKP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LKP8_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1J700	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J700_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g25000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g25000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g102900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g25000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g25000

Limit To All Plant Sequences

>Glyma01g25000.2   sequence type=transcript   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAACCCTATTGTAGCACCTACTCTACTGAGATATTGCAACCATGTCTCATAATGTTATTGGCATAGAACCTTGGATCATACAGTTAGTTATATCGAGTGATTATATTAGTTTGCACAATGCTTCTGTAACTTGGTTTAGGGAATTCTTGAGTGTCTTTTTTTTGTGTTGCTGTATTCGATCTTTCTTATAATCCAAATAAGATGATTTGAGTCTTGATACTTCGGTTGTAGCTAACAACTAGTTTCAGTTTCCATCTTTGTATGCGCATATATAGTGTTGGTTACCGCCACATTGATTGTGCTCAAATCTATGGCAATGAGAAAGAGATTGGCTCTATGTTGAAGAAGCTGTTTGAGGAGGGTGTAGTGAAGCGTGAGGATTTGTGGATTACATCTAAACTATGGAATACTGATCATGCTCCAGAAGACGTACCACTGGCATTGGACAGGACCTTGAAAGATTTGCAGCTTGATTATGTAGATTTGTATCTTATCCACTGGCCGACTTCAATGAAGAAAGGATCAGTTGGCTTTAATCCTGAAAATCTTGTGCAACCAAACATACCTAACACATGGAAGGCAATGGAAGCACTCTATGACTCCGGCAAGGCTCGGGCTATAGGTGTAAGCAATTTTTCCACCAAGAAGCTGGCAGATTTGCTGGCAATTGCTCGTGTTCCTCCTGCTGTCAACCAGGTGGAGTGTCATCCTTCATGGCAGCAGGACAAGCTGCAGGCTTTCTGCAATTCCAAAGGAGTCCACCTCACTGGATATTCACCTTTGGGTTCCCCTGGAACAACCTATTTTAAAAGTGATGTCCTTAAGCACCCAATTATAAATATGGTTGCGGAGAAACTAGGCAAGACTCCTGCACAAGTAGCTCTTCGCTGGGGACTGCAAATGGGCCATAGTGTTCTTCCCAAGAGTACTAACGAAACACGGATAAAGGAAAATTTTGATGTTTCTGGCTGGTCTATACCTGAGGACTTCCTTGCTAAATTTTCTGAGATTCAACAGGCAAGATTACTCAGGGGTACCACATTTGTCCATGAAACTTACGGTGCCTACAAATCTGTCGAGGAATTATGGGATGGTGAAATCTAAGAAGTCTGTTCTGTAAATTTGATAATTGAATGGATCGAGGAGTGAGAGTTCTGTGAAACTGTGAATCAGTGTACTACTCCTTTGGTTAAGTTCACCCAATACTGTTTGATTGTTGACTTGAGCAAATTTTGTTAAATTCCTGGGTTGATGAAACTTTGCATCATCACACTCATCGACATCTCTCTTTCCAAAACCTTTTATTTATTTATTATTTTATCTATTATTGGATGAATTGTCATGTGGTTTCCACTAATAGAGTGGGCTGAAGATTATTAAGTAGAGAGTTCATGTTAAAATTCATTCACTAATAAATAAAAAAGTTTTA

>Glyma01g25000.3   sequence type=transcript   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGTTTAGAAGCTGTTTTTACTTTTTAGGTTATTTCAATAGGCTCTCTAGGGTAACTTATGAAAACAACTTACAACTTATATGAAAATAGTTTAACTCAATTTCCTAATCAATTGTAGAAACAATTTATACACAATGTTTACATGATAAGTACCTATTCAATAAGTCCTTAATTGAGTTGTTTACCCAAATGGGCCCTAAATCTTCCTCTCAACCCCTTTGATTATTTATAGGCAACATGTCTTATTTCTCTAACTATCTCAGCCTCAAACTAACTCTAATTACTCTAGTAACTGAATATCTCCATCTGTCAAACTCCAATCTCCTAACCAACTAATGGATCCACTGGCCGACTTCAATGAAGAAAGGATCAGTTGGCTTTAATCCTGAAAATCTTGTGCAACCAAACATACCTAACACATGGAAGGCAATGGAAGCACTCTATGACTCCGGCAAGGCTCGGGCTATAGGTGTAAGCAATTTTTCCACCAAGAAGCTGGCAGATTTGCTGGCAATTGCTCGTGTTCCTCCTGCTGTCAACCAGGTGGAGTGTCATCCTTCATGGCAGCAGGACAAGCTGCAGGCTTTCTGCAATTCCAAAGGAGTCCACCTCACTGGATATTCACCTTTGGGTTCCCCTGGAACAACCTATTTTAAAAGTGATGTCCTTAAGCACCCAATTATAAATATGGTTGCGGAGAAACTAGGCAAGACTCCTGCACAAGTAGCTCTTCGCTGGGGACTGCAAATGGGCCATAGTGTTCTTCCCAAGAGTACTAACGAAACACGGATAAAGGAAAATTTTGATGTTTCTGGCTGGTCTATACCTGAGGACTTCCTTGCTAAATTTTCTGAGATTCAACAGGCAAGATTACTCAGGGGTACCACATTTGTCCATGAAACTTACGGTGCCTACAAATCTGTCGAGGAATTATGGGATGGTGAAATCTAAGAAGTCTGTTCTGTAAATTTGATAATTGAATGGATCGAGGAGTGAGAGTTCTGTGAAACTGTGAATCAGTGTACTACTCCTTTGGTTAAGTTCACCCAATACTGTTTGATTGTTGACTTGAGCAAATTTTGTTAAATTCCTGGGTTGATGAAACTTTGCATCATCACACTCATCGACATCTCTCTTTCCAAAACCTTTTATTTATTTATTATTTTATCTATTATTGGATGAATTGTCATGTGGTTTCCACTAATAGAGTGGGCTGAAGATTATTAAGTAGAGAGTTCATGTTAAAATTCATTCACTAATAAATAAAAAAGTTTTA

Coding sequences of Glyma01g25000

Limit To All Plant Sequences

>Glyma01g25000.1   sequence type=CDS   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAACGATATTGGATTCTTCGACCTCAACACGGGCGCCAAGATCCCTTCCGTCGGCTTGGGAACATGGCAGTCCGATCCTGGCCTCGTCGCTCAAGCCGTCGCTGCGGCCATCAAGGTTGGTTACCGCCACATTGATTGTGCTCAAATCTATGGCAATGAGAAAGAGATTGGCTCTATGTTGAAGAAGCTGTTTGAGGAGGGTGTAGTGAAGCGTGAGGATTTGTGGATTACATCTAAACTATGGAATACTGATCATGCTCCAGAAGACGTACCACTGGCATTGGACAGGACCTTGAAAGATTTGCAGCTTGATTATGTAGATTTGTATCTTATCCACTGGCCGACTTCAATGAAGAAAGGATCAGTTGGCTTTAATCCTGAAAATCTTGTGCAACCAAACATACCTAACACATGGAAGGCAATGGAAGCACTCTATGACTCCGGCAAGGCTCGGGCTATAGGTGTAAGCAATTTTTCCACCAAGAAGCTGGCAGATTTGCTGGCAATTGCTCGTGTTCCTCCTGCTGTCAACCAGGTGGAGTGTCATCCTTCATGGCAGCAGGACAAGCTGCAGGCTTTCTGCAATTCCAAAGGAGTCCACCTCACTGGATATTCACCTTTGGGTTCCCCTGGAACAACCTATTTTAAAAGTGATGTCCTTAAGCACCCAATTATAAATATGGTTGCGGAGAAACTAGGCAAGACTCCTGCACAAGTAGCTCTTCGCTGGGGACTGCAAATGGGCCATAGTGTTCTTCCCAAGAGTACTAACGAAACACGGATAAAGGAAAATTTTGATGTTTCTGGCTGGTCTATACCTGAGGACTTCCTTGCTAAATTTTCTGAGATTCAACAGGCAAGATTACTCAGGGGTACCACATTTGTCCATGAAACTTACGGTGCCTACAAATCTGTCGAGGAATTATGGGATGGTGAAATCTAA

>Glyma01g25000.2   sequence type=CDS   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCATATATAGTGTTGGTTACCGCCACATTGATTGTGCTCAAATCTATGGCAATGAGAAAGAGATTGGCTCTATGTTGAAGAAGCTGTTTGAGGAGGGTGTAGTGAAGCGTGAGGATTTGTGGATTACATCTAAACTATGGAATACTGATCATGCTCCAGAAGACGTACCACTGGCATTGGACAGGACCTTGAAAGATTTGCAGCTTGATTATGTAGATTTGTATCTTATCCACTGGCCGACTTCAATGAAGAAAGGATCAGTTGGCTTTAATCCTGAAAATCTTGTGCAACCAAACATACCTAACACATGGAAGGCAATGGAAGCACTCTATGACTCCGGCAAGGCTCGGGCTATAGGTGTAAGCAATTTTTCCACCAAGAAGCTGGCAGATTTGCTGGCAATTGCTCGTGTTCCTCCTGCTGTCAACCAGGTGGAGTGTCATCCTTCATGGCAGCAGGACAAGCTGCAGGCTTTCTGCAATTCCAAAGGAGTCCACCTCACTGGATATTCACCTTTGGGTTCCCCTGGAACAACCTATTTTAAAAGTGATGTCCTTAAGCACCCAATTATAAATATGGTTGCGGAGAAACTAGGCAAGACTCCTGCACAAGTAGCTCTTCGCTGGGGACTGCAAATGGGCCATAGTGTTCTTCCCAAGAGTACTAACGAAACACGGATAAAGGAAAATTTTGATGTTTCTGGCTGGTCTATACCTGAGGACTTCCTTGCTAAATTTTCTGAGATTCAACAGGCAAGATTACTCAGGGGTACCACATTTGTCCATGAAACTTACGGTGCCTACAAATCTGTCGAGGAATTATGGGATGGTGAAATCTAA

>Glyma01g25000.3   sequence type=CDS   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAAGGATCAGTTGGCTTTAATCCTGAAAATCTTGTGCAACCAAACATACCTAACACATGGAAGGCAATGGAAGCACTCTATGACTCCGGCAAGGCTCGGGCTATAGGTGTAAGCAATTTTTCCACCAAGAAGCTGGCAGATTTGCTGGCAATTGCTCGTGTTCCTCCTGCTGTCAACCAGGTGGAGTGTCATCCTTCATGGCAGCAGGACAAGCTGCAGGCTTTCTGCAATTCCAAAGGAGTCCACCTCACTGGATATTCACCTTTGGGTTCCCCTGGAACAACCTATTTTAAAAGTGATGTCCTTAAGCACCCAATTATAAATATGGTTGCGGAGAAACTAGGCAAGACTCCTGCACAAGTAGCTCTTCGCTGGGGACTGCAAATGGGCCATAGTGTTCTTCCCAAGAGTACTAACGAAACACGGATAAAGGAAAATTTTGATGTTTCTGGCTGGTCTATACCTGAGGACTTCCTTGCTAAATTTTCTGAGATTCAACAGGCAAGATTACTCAGGGGTACCACATTTGTCCATGAAACTTACGGTGCCTACAAATCTGTCGAGGAATTATGGGATGGTGAAATCTAA

Predicted protein sequences of Glyma01g25000

Limit To All Plant Sequences

>Glyma01g25000.1   sequence type=predicted peptide   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNDIGFFDLNTGAKIPSVGLGTWQSDPGLVAQAVAAAIKVGYRHIDCAQIYGNEKEIGSMLKKLFEEGVVKREDLWITSKLWNTDHAPEDVPLALDRTLKDLQLDYVDLYLIHWPTSMKKGSVGFNPENLVQPNIPNTWKAMEALYDSGKARAIGVSNFSTKKLADLLAIARVPPAVNQVECHPSWQQDKLQAFCNSKGVHLTGYSPLGSPGTTYFKSDVLKHPIINMVAEKLGKTPAQVALRWGLQMGHSVLPKSTNETRIKENFDVSGWSIPEDFLAKFSEIQQARLLRGTTFVHETYGAYKSVEELWDGEI*

>Glyma01g25000.2   sequence type=predicted peptide   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIYSVGYRHIDCAQIYGNEKEIGSMLKKLFEEGVVKREDLWITSKLWNTDHAPEDVPLALDRTLKDLQLDYVDLYLIHWPTSMKKGSVGFNPENLVQPNIPNTWKAMEALYDSGKARAIGVSNFSTKKLADLLAIARVPPAVNQVECHPSWQQDKLQAFCNSKGVHLTGYSPLGSPGTTYFKSDVLKHPIINMVAEKLGKTPAQVALRWGLQMGHSVLPKSTNETRIKENFDVSGWSIPEDFLAKFSEIQQARLLRGTTFVHETYGAYKSVEELWDGEI*

>Glyma01g25000.3   sequence type=predicted peptide   gene model=Glyma01g25000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKGSVGFNPENLVQPNIPNTWKAMEALYDSGKARAIGVSNFSTKKLADLLAIARVPPAVNQVECHPSWQQDKLQAFCNSKGVHLTGYSPLGSPGTTYFKSDVLKHPIINMVAEKLGKTPAQVALRWGLQMGHSVLPKSTNETRIKENFDVSGWSIPEDFLAKFSEIQQARLLRGTTFVHETYGAYKSVEELWDGEI*

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