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Report for Sequence Feature Glyma01g24900

Feature Type:gene_model
Chromosome:Gm01
Start:32814005
stop:32817943
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g24900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53850AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr3:19948262-19948994 REVERSE LENGTH=154 SoyBaseE_val: 2.00E-78ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_B8BD96UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein OsI_30532 n=2 Tax=Oryza sativa RepID=CSPLQ_ORYSI SoyBaseE_val: 3.00E-59ISS
UniRef100_C6SYC7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYC7_SOYBN SoyBaseE_val: 5.00E-106ISS

Expression Patterns of Glyma01g24900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g24900 not represented in the dataset
Glyma01g24900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g102400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g24900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g24900
>Glyma01g24900.1   sequence type=CDS   gene model=Glyma01g24900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGCGGCTGTTGGGTGGGCCCGGGACGATTAGCGGGTTCCTGTTGAGGTTTGGGCAATGCGCATTTGGTGCCGCTTCGATTGCTATTATGGTCACTTCCTTTGGCTTCTCTAGCTACACCGCTTTCTGCTATTTAATTGCATCAATGGGACTTCAAGTGCTCTGGAGCTTTGGACTTGCATGTCTTGATATTTATGCTTTGAGGAGAAAGAGAGACCTACAAAATCCTATTCTTGTCAGCCTGTTTGTTGTGGGTGATTGGGTAACAGCGACTTTATCACTTGCCGCTGCATGCTCATCAGCAGGAATTGTAGTATTATACACAAGAGACCTGACTGCATGCGCGACTAGTAAGCATCTCACATGCAACAGATACCAGATTTCTGTGGCCATGGCTTTTGTCACCTGGGTTCTCACAGCAATGTCATCGCATGTGATGTTCTGGATCTTGGCCTCAGTCTAG
Predicted protein sequences of Glyma01g24900
>Glyma01g24900.1   sequence type=predicted peptide   gene model=Glyma01g24900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKRLLGGPGTISGFLLRFGQCAFGAASIAIMVTSFGFSSYTAFCYLIASMGLQVLWSFGLACLDIYALRRKRDLQNPILVSLFVVGDWVTATLSLAAACSSAGIVVLYTRDLTACATSKHLTCNRYQISVAMAFVTWVLTAMSSHVMFWILASV*






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