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Report for Sequence Feature Glyma01g24811

Feature Type:gene_model
Chromosome:Gm01
Start:32561179
stop:32561613
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g24811
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG01250AT Annotation by Michelle Graham. TAIR10: NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389 SoyBaseE_val: 7.00E-22ISS
GO:0042773GO-bp Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled electron transport SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0008137GO-mf Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity SoyBaseN/AISS
PF00361PFAM NADH-Ubiquinone/plastoquinone (complex I), various chains JGI ISS
UniRef100_B9T5I2UniRef Annotation by Michelle Graham. Most informative UniRef hit: NADH dehydrogenase, putative n=2 Tax=Ricinus communis RepID=B9T5I2_RICCO SoyBaseE_val: 2.00E-23ISS
UniRef100_B9T5I2UniRef Annotation by Michelle Graham. Best UniRef hit: NADH dehydrogenase, putative n=2 Tax=Ricinus communis RepID=B9T5I2_RICCO SoyBaseE_val: 2.00E-23ISS

Expression Patterns of Glyma01g24811
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g24811 not represented in the dataset
Glyma01g24811 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24811 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g101600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g24811
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g24811
>Glyma01g24811.1   sequence type=CDS   gene model=Glyma01g24811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTTATTCCAAGACGGTTTTCGAAAAACTATCTTAGAAGACTGTCAGAGATCGAGCTTCAAGAAATAGTGAACGGTCTTATCAATACACAAATGTATAACTCCCCAAGAATTTTAATTGCACTTTTATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTATTCTAAATCTTATCCCTCGTTTTGTCCTTCTTTGGAACCCTCCCTTCCACACCATTGTTGCTACTCCATTCACCGTTGGTGACTCTTCCGTAACTGAACACCATCGATTTGTCAGGAGCCTCAGATTTCAAATCTAA
Predicted protein sequences of Glyma01g24811
>Glyma01g24811.1   sequence type=predicted peptide   gene model=Glyma01g24811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVIPRRFSKNYLRRLSEIELQEIVNGLINTQMYNSPRILIALLFITVGIGFKLSPAPSHQWTPILNLIPRFVLLWNPPFHTIVATPFTVGDSSVTEHHRFVRSLRFQI*






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