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Report for Sequence Feature Glyma01g24750

Feature Type:gene_model
Chromosome:Gm01
Start:32402351
stop:32403396
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g24750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34540AT Annotation by Michelle Graham. TAIR10: NmrA-like negative transcriptional regulator family protein | chr4:16500506-16501932 FORWARD LENGTH=306 SoyBaseE_val: 2.00E-78ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0010283GO-mf Annotation by Michelle Graham. GO Molecular Function: pinoresinol reductase activity SoyBaseN/AISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF62Panther EPIMERASE-RELATED JGI ISS
PF05368PFAM NmrA-like family JGI ISS
UniRef100_G7JHC4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone reductase-like protein n=2 Tax=Medicago truncatula RepID=G7JHC4_MEDTR SoyBaseE_val: 2.00E-101ISS
UniRef100_UPI0002337ACEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337ACE related cluster n=1 Tax=unknown RepID=UPI0002337ACE SoyBaseE_val: 2.00E-131ISS

Expression Patterns of Glyma01g24750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g101300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g24750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g24750
>Glyma01g24750.2   sequence type=CDS   gene model=Glyma01g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTTTATCCCATCTAAATTTGGGTTAGATCCTACCAGGGTTCAAGTATTTGTGCTTGAAGATGGCTATAATTTTTATGCACCCAAAGTTGAAATTCGTAGACTTGTGGAGGCTGAAGGCATTCCTTACACTTTCATCTCATGCAATTTCTTTGTGAGGATTTTGCTTCCTTCTCTTGCTCAGCCAAGCTTAGATGCTCCTCCAAGGGACAAGGTCACCATATTTTTTTATGGGAATATAAAGGTTCACGACCCTTGTACGTTAAACAAAGTGTTGTATTTGAGACCCCCGAGAAATGTTTGTTCTTTGAATGAGATGGTTGAGATGTGGGATATTAAGATTGGCAAGAAGCTTGAGACATTGCATGTCTTTGAAGGAGAGTTGCTCCAGAAAATCAAAGGGACTTCTTTCCCTGCCAATTTTGAGATGGTCTTCATATATTCTGCTTTCATAAAGGGAGATCACACATACTTTGATATTGAGTCATCCTTTGGTGTGAATGGTACACAACTATATCCACACCTGAAATATACCACAGTAAGTGAGTTCTTAGACACACTAGTTTAG
Predicted protein sequences of Glyma01g24750
>Glyma01g24750.2   sequence type=predicted peptide   gene model=Glyma01g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RFIPSKFGLDPTRVQVFVLEDGYNFYAPKVEIRRLVEAEGIPYTFISCNFFVRILLPSLAQPSLDAPPRDKVTIFFYGNIKVHDPCTLNKVLYLRPPRNVCSLNEMVEMWDIKIGKKLETLHVFEGELLQKIKGTSFPANFEMVFIYSAFIKGDHTYFDIESSFGVNGTQLYPHLKYTTVSEFLDTLV*






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