Glyma01g24720 - SoyBase

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Report for Sequence Feature Glyma01g24720

Feature Type:	gene_model
Chromosome:	Gm01
Start:	32308211
stop:	32311363
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g24720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19390	AT	Annotation by Michelle Graham. TAIR10: Rho GTPase activation protein (RhoGAP) with PH domain \| chr5:6531906-6537143 FORWARD LENGTH=714	SoyBase	E_val: 4.00E-40	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
UniRef100_G7K336	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rho GTPase-activating protein n=1 Tax=Medicago truncatula RepID=G7K336_MEDTR	SoyBase	E_val: 7.00E-104	ISS
UniRef100_I1M750	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M750_SOYBN	SoyBase	E_val: 3.00E-114	ISS

Expression Patterns of Glyma01g24720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma01g24720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g24720

Limit To All Plant Sequences

>Glyma01g24720.1   sequence type=CDS   gene model=Glyma01g24720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAAAATATACAGAGATGTTCCATGTCAGCAGATTCTCAGGTTGAAAACAGTGGGAGTGAAGATTCAACTGATGATGATTATATAGATGTGAAAGAAAATGGTTACCATGATGCAGAGAATGAAGTTGATAAGGAGACAGATGATGATGTTGATTGTATTCAGAGTGGAAAATTGAGTGAGAGTAGTGGTTATGCTGGCAGTGATCTTTATGATTACAAGGCATTTGGAGGTGATGATTCCAATGTTGGATCCTCCAGTAGTAACCATGCTAAGACTAAAAATGTTAATCTTAATGTTGTTCCAGATACCCCACTCTCTGAGGATCAAAACAAGCAAAGAAAGGGCAGTGAAAACCCAGTTGATGAGAATGATGCTTCAAATTTGTTTCCTTCAACTGAATCATATCGATCCATGGGTGAGATTTTATCTTCTATGGACCCTGGCAACCATTTACCCATGCAAGTGACTGAATCAGGTTTTGGAAAGCAAACAAGTAAAGCTAGTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATCCAAGGAAGACACCGTCAATGGAATCAGTTGATTCTTCTGGAGAAGAGGAGTTCTCTAGCTTGGCTTTTTTCGTCAACTGTAACAGCTATGCTTGCTATTCAGAGACTAGAGATTGCAAAAAAGGCAATGCAATTTTGCAAGCAAGCTTAGAGAGAAGGAAGCAAGCTTTGCATGACTCTTTTGAAGGTATACTTCTGCTGACTGAAGCTCAGGATTTTATAATCATTACGGCCAAAAATTATGCCACATCTTTCTTTTCGCTCAATAGAAATGAAATGTTGAGGTTTCTTCAGCAATATTTTGATTCAACCCTGGCCTTTGTTAATCACGAGAGGAAACAAAGGACTAAGGAGAGTTTGTTGGGCACTAATTGGAGAAATATCAAAGGACAAGTATTGGCATCTAGTAATGGTACTAGACAGCCTTCTCGAAAGAAATTTTTAAAGTCAAGTCCTAGCAATTCCAAAAGTATTGAGGCATCAACAAGCATGTCTGTCGATGATCTTGGTGCCCTTGATTCTGCCTCTGTGCCTTCCACCTCAAGAGCAACAGAG

Predicted protein sequences of Glyma01g24720

Limit To All Plant Sequences

>Glyma01g24720.1   sequence type=predicted peptide   gene model=Glyma01g24720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EENIQRCSMSADSQVENSGSEDSTDDDYIDVKENGYHDAENEVDKETDDDVDCIQSGKLSESSGYAGSDLYDYKAFGGDDSNVGSSSSNHAKTKNVNLNVVPDTPLSEDQNKQRKGSENPVDENDASNLFPSTESYRSMGEILSSMDPGNHLPMQVTESGFGKQTSKASSASFSSKRSTFWGRSNPRKTPSMESVDSSGEEEFSSLAFFVNCNSYACYSETRDCKKGNAILQASLERRKQALHDSFEGILLLTEAQDFIIITAKNYATSFFSLNRNEMLRFLQQYFDSTLAFVNHERKQRTKESLLGTNWRNIKGQVLASSNGTRQPSRKKFLKSSPSNSKSIEASTSMSVDDLGALDSASVPSTSRATE

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